nipy/nipype: 1.4.0

Esteban, Oscar; Markiewicz, Christopher J.; Burns, Christopher; Johnson, Hans; Ziegler, Erik; Manhães-Savio, Alexandre; Jarecka, Dorota; Ellis, David Gage; Yvernault, Benjamin; Hamalainen, Carlo; Notter, Michael Philipp; Salo, Taylor; Waskom, Michael; Goncalves, Mathias; Jordan, Kesshi; Wong, Jason; Dewey, Blake E; Madison, Cindee; Clark, Daniel; Loney, Fred; Clark, Dav; Nielson, Dylan M.; Keshavan, Anisha; Joseph, Michael; Dayan, Michael; Modat, Marc; Bougacha, Salma; Gramfort, Alexandre; Visconti di Oleggio Castello, Matteo; Pinsard, Basile; Berleant, Shoshana; Christian, Horea; Rokem, Ariel; Halchenko, Yaroslav O.; Kaczmarzyk, Jakub; Benderoff, Erin; Ćirić , Rastko; Varoquaux, Gael; Moloney, Brendan; DuPre, Elizabeth; Koudoro, Serge; Clark, Michael G.; Wassermann, Demian; Cipollini, Ben; Guillon, Jérémy; Markello, Ross; Buchanan, Colin; Hanke, Michael; Tungaraza, Rosalia; Sikka, Sharad; Gillman, Ashley; Pauli, Wolfgang M.; de Hollander, Gilles; Forbes, Jessica; Iqbal, Shariq; Mordom, David; Mancini, Matteo; Malone, Ian B.; Dubois, Mathieu; Schwartz, Yannick; Frohlich, Caroline; Tabas, Alejandro; Welch, David; Richie-Halford, Adam; Tilley II, Steven; Watanabe, Aimi; Nichols, B. Nolan; Huntenburg, Julia M.; Eshaghi, Arman; Schaefer, Alexander; Ginsburg, Daniel; Bottenhorn, Katherine; Cumba, Chad; Acland, Benjamin; Heinsfeld, Anibal Sólon; Kastman, Erik; Kent, James; Kleesiek, Jens; Erickson, Drew; Giavasis, Steven; Ghayoor, Ali; Liem, Franz; De La Vega, Alejandro; Küttner, René; Millman, Jarrod; Perez-Guevara, Martin Felipe; Lee, John A.; Zhou, Dale; Haselgrove, Christian; Glen, Daniel; Renfro, Mandy; Correa, Carlos; Liu, Siqi; Lampe, Leonie; Kong, Xiang-Zhen; Hallquist, Michael; Kahn, Ari E.; Glatard, Tristan; Triplett, William; Chawla, Kshitij; Salvatore, John; Pérez-García, Fernando; Ma, Feilong; Park, Anne; Craddock, R. Cameron; Hinds, Oliver; Poldrack, Russell; Perkins, L. Nathan; Kim, Sin; Chetverikov, Andrey; Inati, Souheil; Cieslak, Matthew; Grignard, Martin; Snoek, Lukas; Sisk, Lucinda M.; Leinweber, Katrin; Junhao WEN; Matsubara, K; Urchs, Sebastian; Blair, Ross; Floren, Andrew; Mattfeld, Aaron; Gerhard, Stephan; Cooper, Gavin; Haehn, Daniel; Tambini, Arielle; Broderick, William; Andberg, Sami Kristian; Noel, Maxime; Durnez, Joke; Stadler, Jörg; Condamine, Eric; Papadopoulos Orfanos, Dimitri; Geisler, Daniel; Weinstein, Alejandro; Harms, Robbert; Khanuja, Ranjeet; Sharp, Paul; Stanley, Olivia; Lee, Nat; Crusoe, Michael R.; Brett, Matthew; Falkiewicz, Marcel; Podranski, Kornelius; Linkersdörfer, Janosch; Flandin, Guillaume; Lerma-Usabiaga, Garikoitz; Shachnev, Dmitry; Tarbert, Claire; Cheung, Brian; Meyers, Benjamin; Van, Andrew; Davison, Andrew; Weninger, Leon; Molina-Romero, Miguel; Rothmei, Simon; Bilgel, Murat; Schlamp, Kai; Ort, Eduard; McNamee, Daniel; Lai, Jeff; Arias, Jaime; Bielievtsov, Dmytro; Steele, Christopher John; Huang, Lijie; Gonzalez, Ivan; Warner, Joshua; Margulies, Daniel S.; Contier, Oliver; Marina, Ana; Saase, Victor; Nickson, Thomas; Varada, Jan; Schwabacher, Isaac; Pellman, John; Khanuja, Ranjeet; Pannetier, Nicolas; McDermottroe, Conor; Mihai, Paul Glad; Lai, Jeff; Gorgolewski, Krzysztof J.; Ghosh, Satrajit

doi:10.5281/zenodo.3588470

Published December 20, 2019 | Version 1.4.0

Software Open

nipy/nipype: 1.4.0

1. Department of Psychology, Stanford University
2. Stanford University
3. University of Iowa
4. Independent
5. Klinikum rechts der Isar, TUM. ACPySS
6. MIT
7. The University of Iowa
8. The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland
9. Florida International University
10. University of California, San Francisco
11. Shattuck Lab, UCLA Brain Mapping Center
12. Department of Electrical and Computer Engineering, Johns Hopkins University
13. Developer
14. UC Berkeley
15. National Institute of Mental Health
16. UC Berkeley - UCSF Graduate Program in Bioengineering
17. The Centre for Addiction and Mental Health
18. Mayo Clinic, Neurology, Rochester, MN, USA
19. Molecular Imaging Research Center, CEA, France
20. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
21. Dartmouth College
22. Institute for Biomedical Engineering, ETH and University of Zurich
23. The University of Washington eScience Institute
24. Dartmouth College: Hanover, NH, United States
25. Concordia University
26. INRIA
27. Montreal Neurological Institute and Hospital
28. Indiana University, IN, USA
29. National Institutes of Health
30. Athena EPI, Inria Sophia-Antipolis
31. UC San Diego
32. ARAMIS LAB, Brain and Spine Institute (ICM), Paris, France.
33. Otto-von-Guericke-University Magdeburg, Germany
34. Nathan s Kline institute for psychiatric research
35. Australian eHealth Research Centre, Commonwealth Scientific and Industrial Research Organisation; University of Queensland
36. California Institute of Technology
37. Vrije Universiteit, Amsterdam
38. Duke University
39. University College London
40. Child Mind Institute
41. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.
42. University of Washington
43. Holland Bloorview Kids Rehabilitation Hospital
44. SRI International
45. Research Group Neuroanatomy and Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
46. National University Singapore
47. Washington University in St Louis
48. Harvard University - Psychology
49. UniversityHospital Heidelberg, Germany
50. University of Zurich
51. University of Texas at Austin
52. Neurospin/Unicog/Inserm/CEA
53. NIMH IRP
54. NIMH, Scientific and Statistical Computing Core
55. The University of Sydney
56. MPI CBS Leipzig, Germany
57. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
58. University of Pennsylvania
59. 1 McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University, Montréal, 3801 University Street, WB-208, H3A 2B4, Québec, Canada. 2 University of Lyon, CNRS, INSERM, CREATIS., Villeurbanne, 7, avenue Jean Capelle, 69621, France.
60. INRIA-Saclay, Team Parietal
61. Boston University
62. Korea Advanced Institute of Science and Technology
63. Donders Institute for Brain, Cognition and Behavior, Center for Cognitive Neuroimaging
64. Department of Neuropsychiatry, University of Pennsylvania
65. GIGA Institute
66. University of Amsterdam
67. Yale University; New Haven, CT, United States
68. TIB – Leibniz Information Centre for Science and Technology and University Library, Hannover, Germany
69. The University of Texas at Austin
70. Institute of Neuroinformatics, ETH/University of Zurich
71. University of Newcastle, Australia
72. University of Helsinki
73. Department of Psychology, Stanford University; Parietal, INRIA
74. Leibniz Institute for Neurobiology
75. CNRS, UMS3552 IRMaGe
76. CEA
77. Technische Universität Dresden, Faculty of Medicine, Department of Child and Adolescent Psychiatry
78. University of Illinois Urbana Champaign
79. Dept of Medical Biophysics, Univeristy of Western Ontario
80. German Institute for International Educational Research
81. University of Pittsburgh
82. Institute of Imaging & Computer Vision, RWTH Aachen University, Germany
83. Technical University Munich
84. National Institute on Aging, Baltimore, MD, USA
85. Vrije Universiteit Amsterdam
86. University of Cambridge
87. MPI-CBS; McGill University
88. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
89. Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
90. Mayo Clinic
91. Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
92. Child Mind Institute / Nathan Kline Institute
93. Medical Imaging & Biomarkers, Bioclinica, Newark, CA, USA.
94. MIT, HMS

1.4.0 (December 20, 2019) Full changelog

FIX: Mark strings containing regex escapes as raw (https://github.com/nipy/nipype/pull/3106)
ENH: Pacify DeprecationWarnings caused by nibabel 3 pre-release (https://github.com/nipy/nipype/pull/3099)
ENH: Allow Nipype configuration directory to be specified with NIPYPE_CONFIG_DIR environment variable (https://github.com/nipy/nipype/pull/3073)
ENH: Add options and outputs to fsl.Eddy interface (https://github.com/nipy/nipype/pull/3034)
ENH: Add skull_file output to fsl.BET interface (https://github.com/nipy/nipype/pull/3095)
RF: Drop various remaining compatibilities for Python < 3.5 (https://github.com/nipy/nipype/pull/2831)
DOC: Add Python 2 statement to README, reference maintenance branch in CONTRIBUTING (https://github.com/nipy/nipype/pull/3115)
DOC: Miss underline before cmd in example code (https://github.com/nipy/nipype/pull/3107)
STY: Black (https://github.com/nipy/nipype/pull/3096)
MNT: Set junit_family to suppress pytest warning (https://github.com/nipy/nipype/pull/3111)
MNT: Fix Dorota Jarecka ORCID (https://github.com/nipy/nipype/pull/3100)
MNT: Drop Python 2 support (https://github.com/nipy/nipype/pull/2654)

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nipy/nipype: 1.4.0

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