Published December 13, 2019 | Version 1
Dataset Open

Genome–scale approach to study the genetic relatedness among Brucella melitensis strains - wgMLST schema for Brucella melitensis

Authors/Creators

  • 1. Emergency Response and Biopreparedness Unit, Department of Infectious Diseases, National Institute of Health, Lisbon, Portugal
  • 2. Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health, Lisbon, Portugal

Description

wgMLST schema for Brucella melitensis

 

Schema creation

The wgMLST schema was created using the 60 complete genomes of Brucella melitensis available at NCBI, as of January 2019, with the chewBBACA v2.0.11 suite (https://github.com/B-UMMI/chewBBACA), using a training file generated by Prodigal v2.6.3 from the B. melitensis 16M reference genome (RefSeq Accession NC_003317 and NC_003318). For curation and validation, the wgMLST schema was further populated with 212 additional draft genomes: 157 draft genomes (downloaded from NCBI in January 2019) and 55 draft genomes assembled with INNUca v3.1 (PRJEB30030).

File 'Bmelitensis_wgMLST_2656_schema.tar.gz' contains the wgMLST schema formatted for chewBBACA and includes a total of 2656 loci.

Files

Files (2.4 MB)

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