Published December 12, 2019
| Version v1
Dataset
Open
Simulations of single-protein membranes
Authors/Creators
- 1. Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
Description
Nine simulations, each with a single copy of a single protein (1–7,A,B) and 400 DPPC lipids per protein per leaflet. The simulations are performed using the coarse-grained Martini model with scaled-down protein–protein interactions. These systems are described carefully in:
M. Javanainen, H. Martinez-Seara, R. Metzler, and I. Vattulainen; Diffusion of Integral Membrane Proteins in Protein-Rich Membranes. J. Phys. Chem. Lett., 2017, 8 (17), pp 4308–4313, DOI: 10.1021/acs.jpclett.7b01758
The topologies for proteins A&B are included in https://doi.org/10.5281/zenodo.3572241, whereas other ones can be obtained from: https://doi.org/10.5281/zenodo.846428
Files
Files
(13.0 GB)
| Name | Size | |
|---|---|---|
|
md5:abef2dd54cc0bf490b1dcffe2b699b2f
|
1.7 kB | Download |
|
md5:e24e9752ea7c4ffc1fbffb1a1359b8f8
|
450.1 kB | Download |
|
md5:86bab3e56852bc991f8039fc049d52d2
|
13.2 MB | Download |
|
md5:786ad5f7adf03410238988f88ba3bd74
|
1.3 MB | Download |
|
md5:a41d31d10796c7de0ae1b777c2293190
|
462.6 kB | Download |
|
md5:48418c6766b34b9eab674600642d9401
|
440 Bytes | Download |
|
md5:68cf165b1e25d716843c245a20c9803c
|
777.2 kB | Download |
|
md5:28d5f8c66f6e1ff72355a30e5c6b0137
|
1.4 GB | Download |
|
md5:c4b8c5e1df53d3d46eddda4024c32ac5
|
455.6 kB | Download |
|
md5:02046f30f9f4025128e1f84b0060f463
|
13.0 MB | Download |
|
md5:feb272e136d5ed920d8d2cbea9774b51
|
1.3 MB | Download |
|
md5:2b93061bd5f3df2239cf70c39c7539bd
|
470.7 kB | Download |
|
md5:e6332f54f50ed205be5588f888251cc2
|
440 Bytes | Download |
|
md5:da60f2b647b830ddfd5234da9527bfa0
|
830.1 kB | Download |
|
md5:ba579dc2322f7e9d6ce95a6579093609
|
1.4 GB | Download |
|
md5:fe1e614a568ebbd388345c040e7d5364
|
463.2 kB | Download |
|
md5:55bedace6fe0d22a37fcf05c9c4baf58
|
13.2 MB | Download |
|
md5:210ea823b7beb22306f9fafefce2eaf7
|
1.3 MB | Download |
|
md5:d2ee51aa0ee3d1d01baf6da5f81e6325
|
481.4 kB | Download |
|
md5:9506a72a4f573aa9d1c43e7edfa68858
|
440 Bytes | Download |
|
md5:2108cbba83bff0b992f08b7d72cdea0e
|
887.6 kB | Download |
|
md5:1eaf9332517dec0d793643bcbc5690a6
|
1.4 GB | Download |
|
md5:9c306028ea8f0479a82a88e03ac0d1f3
|
479.6 kB | Download |
|
md5:dc3c462c673cc69a4f658456fe84865f
|
13.2 MB | Download |
|
md5:dbb288a3b1ce7da8dd83708fc5130f57
|
1.4 MB | Download |
|
md5:085f9cb1921fa2d94417bfd2c16e5daa
|
504.7 kB | Download |
|
md5:529d2fa0cfeb23564faa8b0252d13e15
|
440 Bytes | Download |
|
md5:221ed4af82fa05bf0bfad552aa60324b
|
1.0 MB | Download |
|
md5:201e75f1a2301890883f98fcaa75047b
|
1.4 GB | Download |
|
md5:3249b5957a2b1f0349152604ea691f07
|
494.6 kB | Download |
|
md5:f83d227210354a014411119eafb468c3
|
13.2 MB | Download |
|
md5:f9042eb652b100a7676ad582b35b01a1
|
1.4 MB | Download |
|
md5:72c25fe49f32934c16291227fee42f95
|
526.0 kB | Download |
|
md5:40f37981f87d4b3c5bee6bc8bb29cad5
|
440 Bytes | Download |
|
md5:c464e9d9121111a35ffd9016f549b57a
|
1.3 MB | Download |
|
md5:184e8da09a2dcd2ee352fc9b2a3914c2
|
1.5 GB | Download |
|
md5:fd5aced47a4417a4c0c65eb3bee92773
|
499.6 kB | Download |
|
md5:803b7a53c952d61060c5554de21a6c06
|
13.2 MB | Download |
|
md5:fd86b5a9c6e2cb57bb6d388ae55a2ce9
|
1.4 MB | Download |
|
md5:79d2409b04cfb2baf7725f9399125611
|
533.1 kB | Download |
|
md5:94110f2a4b30aaea5abd26bc2389271b
|
440 Bytes | Download |
|
md5:172a9233a382090501e9bf3a042695a9
|
1.2 MB | Download |
|
md5:cf5e70421d2d61746ab2945f8bbe9738
|
1.5 GB | Download |
|
md5:db014291f03330c5657697e04eb3246a
|
513.5 kB | Download |
|
md5:fc732140439f2d40d75c4f634a4c909a
|
13.2 MB | Download |
|
md5:d59b59237142f97b6cd1bf989fcf2bc9
|
1.5 MB | Download |
|
md5:6faf2bdc1a3d5f8adbdfa6d8b563bcd4
|
552.7 kB | Download |
|
md5:fce8b7f90a0c261724bf2ddf65b896af
|
440 Bytes | Download |
|
md5:50ce256123bc01795fed4c873b0e98ae
|
1.4 MB | Download |
|
md5:0b624ade81c93743ea3e304d6869d429
|
1.5 GB | Download |
|
md5:41639daa7b3d505a192300dd104825b3
|
449.8 kB | Download |
|
md5:35a70c8606ef1812928e3a37db77dd77
|
13.2 MB | Download |
|
md5:b201fda86007a26bcf8589b77246cca2
|
1.3 MB | Download |
|
md5:ad1c9db2833ef43025123a34c2a79ef1
|
462.2 kB | Download |
|
md5:4eb4ff207875480c0da1152529cb3230
|
440 Bytes | Download |
|
md5:88143af8c56e9987fada85b51322a6e9
|
775.8 kB | Download |
|
md5:0dbbc460fbb1632f0aaef6a2fd7658b0
|
1.4 GB | Download |
|
md5:485b1724cde8612eda673ffe48b3b18b
|
450.6 kB | Download |
|
md5:2dab7598df74250f893ab59a84294868
|
13.2 MB | Download |
|
md5:3e163b54f828e600e4bd36857dfba2f6
|
1.3 MB | Download |
|
md5:db05b8cf2068640d27de5aada4b46185
|
463.3 kB | Download |
|
md5:438fdcc636f98e210da4ebac972ead00
|
440 Bytes | Download |
|
md5:8a23814eb93b30306907bd8101309403
|
781.8 kB | Download |
|
md5:28db7135f47ca056473c01c30c4bd468
|
1.4 GB | Download |