Published December 12, 2019
| Version v1
Dataset
Open
Simulations of crowded membranes
Authors/Creators
- 1. Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
Description
Nine simulations, each with nine copies of a single protein (1–7,A,B) and 50 DPPC lipids per protein per leaflet. The simulations are performed using the coarse-grained Martini model with scaled-down protein–protein interactions. These systems are described carefully in:
M. Javanainen, H. Martinez-Seara, R. Metzler, and I. Vattulainen; Diffusion of Integral Membrane Proteins in Protein-Rich Membranes. J. Phys. Chem. Lett., 2017, 8 (17), pp 4308–4313, DOI: 10.1021/acs.jpclett.7b01758
The topologies for proteins A&B are included in this upload, whereas other ones can be obtained from: https://doi.org/10.5281/zenodo.846428
Files
Files
(22.4 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:0ffe837fd9a470dd7cf873ec79028e00
|
18.7 kB | Download |
|
md5:38e36e37bb987fdf3724ad3fe07808db
|
26.2 kB | Download |
|
md5:1ae26995c832243fad41c746e60a38f7
|
564.7 kB | Download |
|
md5:cd1a03ab750c7340e7161ba399c43cb6
|
13.2 MB | Download |
|
md5:1d30e19fceb8abb1fce96fc24310b777
|
1.6 MB | Download |
|
md5:d2f0ed47caa440a56c4d5bf7864fe7f7
|
601.4 kB | Download |
|
md5:fb16ec2f45ef42806c27b4a6dd4fa146
|
467 Bytes | Download |
|
md5:0086474070ebd845d0069575629dc39d
|
939.8 kB | Download |
|
md5:c353759c92b3b97f91a1c1b2a188d16f
|
1.7 GB | Download |
|
md5:36c2c76090be2463bd995a2f2d9bfb65
|
614.6 kB | Download |
|
md5:43f3b7025ec6d6c32af0f887f5a3d1dd
|
13.0 MB | Download |
|
md5:3eaa34a574d97b18e1353e1e0d941ba2
|
1.8 MB | Download |
|
md5:126ba1d1dd7e95d3fd4b700416d5db14
|
672.2 kB | Download |
|
md5:2b77ce60845f95a24da04c695ac086c2
|
463 Bytes | Download |
|
md5:85788d1ee0d1c4fb4879301f623822b3
|
1.0 MB | Download |
|
md5:71da7ddcdf83571f05f33c63aaffd243
|
1.8 GB | Download |
|
md5:4e28c8476c1a4ab1c689d59f8aee334a
|
748.7 kB | Download |
|
md5:bb5535a35f5d25de107a91f860ea68fb
|
13.2 MB | Download |
|
md5:bb4b0d775e2c7e307000d15ba1089176
|
2.1 MB | Download |
|
md5:a29ae2b1464ca88ac3f8b49c521e69d8
|
850.5 kB | Download |
|
md5:ae189bee80963fd1be5a4041bdd1a9f7
|
463 Bytes | Download |
|
md5:1ecf37f29e6cf6443de32f15e1b9444c
|
1.2 MB | Download |
|
md5:b6ff8d18d04b7779a23339103e340a6b
|
2.2 GB | Download |
|
md5:38fcce768c79af365475fed9f4b65f67
|
918.5 kB | Download |
|
md5:7e2941893a7abdbdb19ce48bad1bb26f
|
13.2 MB | Download |
|
md5:06d8a5fbd3dc5672d91609ca9b2c01bc
|
2.6 MB | Download |
|
md5:bdbd7d0297f58145d85d35cc43bf0581
|
1.1 MB | Download |
|
md5:a895a9b138169338b833ba78e3014856
|
467 Bytes | Download |
|
md5:f71cb3af0878ef08ecd71f153207d8f5
|
1.6 MB | Download |
|
md5:1992bc331eab9e71980b455361993071
|
2.7 GB | Download |
|
md5:f4aa855ed1ebea33f60eb2d0a0f04ebf
|
1.1 MB | Download |
|
md5:2d41d7c5a134c20de1f8c2ee0559b628
|
13.2 MB | Download |
|
md5:76897bdec0f673a3c99dc90e41b0c685
|
3.1 MB | Download |
|
md5:453a9976e96e4259eb364e4f79aeb778
|
1.3 MB | Download |
|
md5:8cf271c48989ffd664f6601f90e9d185
|
467 Bytes | Download |
|
md5:9377c5dd669bbde3b4177b4ef65234c8
|
2.0 MB | Download |
|
md5:9ae24486fcde801b562212afbf6d31bc
|
3.2 GB | Download |
|
md5:4759842c2f73eb4c21cbfad4b2473fe6
|
1.1 MB | Download |
|
md5:a4e03ec778d695130066c996bf16c0f0
|
13.2 MB | Download |
|
md5:cae6b23d7afe5056e6c740942010f6ef
|
3.3 MB | Download |
|
md5:7b24c34f84fc07b5ff0930b4f3413481
|
1.4 MB | Download |
|
md5:05de9a4e45743c6f5028170d965df3ad
|
467 Bytes | Download |
|
md5:7a5fd22a23baa68513731b0f34703647
|
2.0 MB | Download |
|
md5:340e6abfd93bb75aba41b1468aded880
|
3.3 GB | Download |
|
md5:556bed1fa3161fc8395c44112698da58
|
1.3 MB | Download |
|
md5:4e686f7b1bed4d64521f2d0d9da86712
|
13.2 MB | Download |
|
md5:4de6aebeb155cc495e2adf86d75c6fdb
|
3.7 MB | Download |
|
md5:cb978c07ed0e0fe9977a96b9fb520ba5
|
1.6 MB | Download |
|
md5:f1a4794cd270f0efe989723356375806
|
467 Bytes | Download |
|
md5:b1ac1a76e802eee413507110e75ca8c7
|
2.3 MB | Download |
|
md5:6143bae7270b427f3218a9c89c623dc4
|
3.7 GB | Download |
|
md5:1e083921b9f374066e03a331dfa42b1a
|
562.4 kB | Download |
|
md5:28b9a5a35987b355683b90e9aa3a8387
|
13.2 MB | Download |
|
md5:d4e52806a795b7ad4132652f18342389
|
1.6 MB | Download |
|
md5:cb6c9f3da59f90959178decfeba811f1
|
598.1 kB | Download |
|
md5:f6038bc29863d079a1e0907203b1ad4d
|
448 Bytes | Download |
|
md5:2debcc9a15f2468ab4f2d16dc02a6366
|
935.9 kB | Download |
|
md5:211a1476e54102c8a740b3c399d38bba
|
1.7 GB | Download |
|
md5:5667d4e938fe9213aee1647496181d81
|
569.1 kB | Download |
|
md5:0714599f701a45d0cd78db9e0fb4688f
|
13.2 MB | Download |
|
md5:bf9fdf613ebee884978c145cfe658ef1
|
1.6 MB | Download |
|
md5:d30d72740e37d83141f2b0b17d6821e2
|
607.6 kB | Download |
|
md5:a6cde6a99168ab8819024d4ca1ff0cde
|
448 Bytes | Download |
|
md5:361f91afc49dc0bbb9dd1a4356629fdd
|
948.9 kB | Download |
|
md5:daeb94084bf99109197e194ff97e68a1
|
1.7 GB | Download |
|
md5:0163edbb5d487a56425118258df339fc
|
1.7 kB | Download |