The genome of C. bovis

Data files associated with C. bovis genome publication. Below is a description of each file: 

caenorhabditis_35species_1167orthos.supermatrix.fa: supermatrix consisting of the concatenated alignments of 1,167 single-copy orthologues which was used to infer the species tree. 

caenorhabditis_35species_1167orthos.treefile: Caenorhabditis species tree in newick format from IQ-TREE

CBOVI.caenorhabditis_bovis_LS_v1.annotations.gff3: GFF3 (annotation) file for the C. bovis reference genome from BRAKER

CBOVI.caenorhabditis_bovis_LS_v1.cds.fna: predicted coding sequences (CDS) for the C. bovis reference genome from BRAKER

CBOVI.caenorhabditis_bovis_LS_v1.proteins.faa: predicted protein/amino acid sequences for the C. bovis reference genome from BRAKER

CBOVI.caenorhabditis_bovis_LS_v1.scaffolds.fna: genome fasta for the C. bovis reference genome (Note: contains contigs, file named scaffold.fna to match filenames of other Caenorhabditis species)

Orthogroups.txt: orthology clustering file of protein sequences from C. bovis, 32 other Caenorhabditis species and two Diploscapter outgroup taxa from OrthoFinder