Supporting data to "Mapping Functional Protein Neighborhoods in the Mouse Brain"

Mouse_brain_20percFDR_annotated_cluster_sparklines

Use this spreadsheet to explore the data. Proteins are ordered by their location in the hierarchical clustering tree, and are displayed along with their assignments to clusters at 9 different, evenly spaced cuts along the tree, their elution profiles (sparklines), annotations, and elution data.

prediction_20percFDR.txt.gz

Ranked, pairwise predictions from the classifier, trimmed to a false discovery rate of 20%

Mouse_DSSO_Xlink_Interlinks.txt

DSSO crosslinks between proteins (interlinks)

Mouse_DSSO_Xlink_Intralinks.txt

DSSO crosslinks within proteins (intralinks)

Mouse_labeled_features.train.csv.gz

Labeled training features

Mouse_labeled_features.test.csv.gz

Labeled test features

Mouse_elutions.tar.gz

Elution spreadsheets for each separate experiment