Data from the article "The mitochondrial phylogeny of land plants shows support for Setaphyta under non-stationary substitution models"
Authors/Creators
- 1. CCMAR - Centro de Ciências do Mar, Faro, Portugal
- 2. Manchester Institute of Biotechnology, School of Earth and Environmental Sciences, University of Manchester, Manchester, United Kingdom; INRA-Université Clermont-Auvergne, Clermont-Ferrand, France
- 3. Department of Life Sciences, Natural History Museum, London, United Kingdom
Description
Data from the article:
"The mitochondrial phylogeny of land plants shows support for Setaphyta under non-stationary substitution models"
Filipe de Sousa, Peter Civáň, João Brazão, Peter G. Foster, Cymon J. Cox
These data are divided in four folders:
* 1_36_gene_nt_alignments_&_trees - contains 36 single gene nucleotide alignments and the corresponding trees inferred from a MCMC analysis on the program p4
* 2_36_gene_aa_alignments_&_trees - contains 36 single gene amino acid alignments and the corresponding trees inferred from a MCMC analysis on the program p4
* 3_concatenated_alignments_&_trees - contains the nucleotide, codon-degenerate and amino acid alignments of 36 concatenated genes and the corresponding trees inferred from MCMC analyses on the programs p4 and phylobayes with composition homogeneous, tree-heterogeneous and site-heterogeneous models; trees correspond to figures S1-S7 on the online supplemental file.
* 4_concatenated_ML_trees - contains the ML trees from the analyses of the concatenated datasets (nucleotide, codon degenerate and amino acid).