Published November 25, 2019 | Version v2

Chromosome-scale assembly of winter oilseed rape Brassica napus

  • 1. Department of Plant Breeding, Justus Liebig University Giessen, Heinrich-Buff-Ring 26-32, 35392 Giessen, Germany
  • 2. NPZ Innovation GmbH, Hohenlieth, 24363 Holtsee, Germany

Description

The files correspond to data and results referenced in research article titled "Chromosome-scale assembly of winter oilseed rape Brassica napus".

Data files below were used in the scaffolding process of genome assembly:

  1. Genetic maps (csv)
    • ExR53-DH_60kSNPmap
    • ExV8-DH_60kSNPmap

Result files below are assembled sequences of the genome and the predicted annotation:

  1. Genome assembly (Express617_v1.fa.gz)
  2. Predicted coding sequences (Express617_v1_cds.fa.gz)
  3. Predicted coding sequences (Express617_v1_gene.gff3.gz)
  4. Predicted protein sequences (Express617_v1_protein.fa.gz)
  5. Predicted repetitive elements (Express617_v1_repeats.gff.gz)

Notes

The following three files are being updated in this version to correct 26 naming discrepancies in the random scaffolds: Express617_v1_cds.fa.gz, Express617_v1_gene.gff3.gz and Express617_v1_protein.fa.gz. In specific, there are 25 random scaffolds named with an extra "c" in these files but not in the genome assembly fasta file (for example R211048c versus R211048) and there is 1 scaffold named as "R21141422" in these files but should be "R21141412" instead. In the updated files, the scaffold IDs are corrected to match the original genome assembly fasta file. Empty lines in the version 1 "Express617_v1_gene.gff3.gz" are also removed. There are no changes in the annotation or sequences.

Files

ExR53-DH_60kSNPmap.csv

Files (332.3 MB)

Name Size
md5:d7b0f66d0a09dadd548168c869ae90f4
243.7 MB Download
md5:198415a71fac512a408409ef4b4796a9
38.4 MB Download
md5:b04877f4e8abb85ad2abda096cf7c914
13.9 MB Download
md5:8e9aa1ebebc743f31b63aef4c1110cdc
20.7 MB Download
md5:10e2b7a9e2e33c6740b304e96e325ebb
14.6 MB Download
md5:76ac9d458539d42221b5e040249efcdd
665.5 kB Preview Download
md5:fbd285eb94f3b59afe2310700483cb7b
338.3 kB Preview Download

Additional details

Related works

Is supplement to
PRJNA587046 (bioproject)