De novo whole genome assembly of the giant tiger prawn (Penaeus monodon) from Vietnam

Basecalled Nanopore FastQ files for the Vietnamese giant tiger prawn and its genome assemblies.

FastQ files (LSK109 sample prep sequenced on a MinION device for 48 hours). Read stats are in *_stat.txt:

TP_A.fastq : gDNA was extracted using Zymo quick DNA minikit from ethanol-preserved muscle tissue

TP_B.fastq : Same as TP_A.fastq

TP_C.fastq : gDNA was extracted using conventional salting out method (longer read length but reduced yield)

Assemblies:

v1_MaSuRCA.fasta: Assembly using poly-G trimmed Illumina reads

v2_NanoporeScaf.fasta : Scaffolding with Nanopore long reads

v3_RNA_NanoporeScaf.fasta: Scaffolding of v2 with RNA reads

v4_NCBI_Filt.fasta: post NCBI contaminant and carry-over adapter removal (final version)

Annotation:

Braker2_annotation.gff3.gz: Inititial Braker2 gff3 output

Braker2_CDS.fna.gz: Initial Braker2 predicted genes

Braker2_prot.faa.gz: Protein translation of Braker2_CDS.fna

CAZy.tar.gz: CAZy annotation for four crustacean species

Filtered_Gene.tar.gz: List of genes with functional annotation and/or orthologs

Interproscan_result.tsv: Raw InterProScan output

OrthoFinder2.tar.gz: OrthoFinder2 output. Proteins used to infer orthologs are included as ".faa".