Published September 19, 2019 | Version 1.0.0
Dataset Open

Genome rearrangement control data for dnarrange

  • 1. Yokohama City University
  • 2. AIST & The University of Tokyo

Description

These files contain information on genome sequence rearrangements. They can be used as controls, to find rearrangements specific to other human datasets, with dnarrange: https://github.com/mcfrith/dnarrange

  • hg38-NA12878-Min.txt.gz: from human female DNA NA12878, sequenced by MinION (Jain et al. Nat. Biotechnol. 2018 36:338-345, rel_3_4).
  • hg38-NA19240-Pro.txt.gz: from human female DNA NA19240, sequenced by PromethION (De Coster et al. Genome Res. 2019 29:1178-1187, ERR258112-5).
  • hg38-NA24385-CLR.txt.gz: from human male DNA NA24385, sequenced by PacBio Sequel (AM Wenger et al. Nat. Biotechnol. 2019, SRR9972588).
  • hg38-panTro6.txt.gz: from chimpanzee male genome Clint_PTRv2/panTro6 (Kronenberg et al. Science 2018 360:eaar6343).

Files

Files (330.7 MB)

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md5:3f5fe395629d99e3b4b47bcbe9b7dcbe
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