Virulence and antibiotic resistance plasticity of Arcobacter butzleri: insights on the genomic diversity of an emerging human pathogen (genome assembly, annotation dataset, core- and pan-genome loci)
Authors/Creators
- 1. Bioinformatics Unit, National Institute of Health Dr. Ricardo Jorge, Lisbon, Portugal
- 2. CICS-UBI-Centro de Investigação em Ciências da Saúde, Universidade da Beira Interior, Covilhã, Portugal
- 3. National Reference Laboratory for Gastrointestinal Infections, National Institute of Health Dr. Ricardo Jorge, Lisbon, Portugal
Description
This dataset refers to the analysis of 49 Arcobacter butzleri genomes and includes the assembled contigs (.fasta and .gbk files), the nucleotide sequences of the predicted transcripts (CDS, rRNA, tRNA, tmRNA, misc_RNA) (.ffn files), the respective amino acid sequences of the translated CDS sequences (.faa files), the nucleotide alignments of all the 1165 core-genome loci, the nucleotide alignments of the genes hecA, tetR and porA, the categorized amino acid sequences of the six hypervariable regions of PorA, and the nucleotide sequences of the first allele of each of the 7474 pan-genome loci with the respective complete allelic profile matrix.
All raw sequence reads used in this study were deposited in the European Nucleotide Archive (ENA) (BioProject PRJEB34441).
Files
Alignments_porA_hecA_and_tetR.zip
Files
(164.2 MB)
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