Published September 11, 2019
| Version 1
Dataset
Open
LD matrices for 1000 genomes phase 1 files for EUR and YRI
Authors/Creators
Description
Pairwise LD values >=0.8 are stored for SNPs from the Phase1 1000 Genomes panel
Format:
chr_snp1
start_snp1
end_snp1
rsid_snp1
chr_snp2
start_snp2
end_snp2
rsid_snp2
r^2
(D' provided in some files)
EUR_hap.txt
from Pouya Kheradpour (Kellis Lab)
phase1 of 1000 genomes
computed by phased haplotype (preferable)
hg19
EUR_geno.txt
from Alicia Martin (Bustamante Lab)
phase 1 of 1000 genomes
computed by genotype
hg19
YRI_geno.txt
YRI LD from Alicia Martin (Bustamante Lab)
phase 1 of 1000 genomes
computed by genotype
hg19
Files
Files
(46.1 GB)
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md5:a2342bef5aa0d9e028d50b056d92e7c6
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2.3 MB | Download |
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36.9 GB | Download |
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md5:accf41ab5e58a2fdf8953d422bb20755
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496 Bytes | Download |
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2.3 MB | Download |