Dataset Open Access

Data and code for 'Connectivity over a disease gradient enables recovery of rainforest frogs'

Bell, Sara C.; Heard, Geoffrey W.; Berger, Lee; Skerratt, Lee F.

This repository provides all data and R code from the analysis presented in the following paper:

Bell, S.C., Heard, G.W., Berger, L. and Skerratt, L.F. (in review). Connectivity over a disease risk gradient enables recovery of rainforest frogs.  

The data are provided as a series of .csv files. R code is provided separately for each of the following components:

1. A script to collate nightly air temperature data from stream-side temperature loggers, plus daily maximum air temperature data from the nearest Australian Bureau of Meteorology recording station to each site.

2. A script to fit a hierarchical linear model to the stream-side air temperature, with the aid of the R2OpenBUGS package.

3. A script to fit a hierarchical logistic regression model to the chytrid infection data, with the aid of the R2OpenBUGS package.

4. A script to fit logistic regression models to the frog occupancy data, with the aid of the R2OpenBUGS package. 

These files allow all analyses from the paper to be reproduced. 

Files (7.6 MB)
Name Size
Behana_Gorge_air_temps.csv
md5:86c72e928cfad0238f2b188d2c99c185
385.0 kB Download
Big_Tableland_air_temps.csv
md5:3eba83407d165c7b6037b40bde99a8e7
369.4 kB Download
Cairns_aero_BOM_data.csv
md5:c047e54a2b636ece2474580731bef8ac
1.1 MB Download
Cardwell_Marine_Pde_BOM_data.csv
md5:bc53123eddc4d8ce380266ad44162265
854.0 kB Download
Chytrid_prevalence_model.R
md5:5d110eb855b81e8fbebb965292172d1c
29.8 kB Download
combined_temps_mod.csv
md5:3fd68c9ae54604a1a8e8db0002e53199
1.3 MB Download
compiled_midnight_air_temp_data.csv
md5:4c0f8908c276a3739608e0bafd3534f7
437.6 kB Download
Cooktown_airport_BOM_data.csv
md5:69cb9302810b65de16d81de0a99f603e
242.1 kB Download
Ethel_Creek_air_temps.csv
md5:beb42c0d5d3ea2f3e890cc6f6a415ef0
299.3 kB Download
frog_capture_data.csv
md5:6a27901b8fa076087961f5035ac24c2e
126.0 kB Download
Frog_survey_data.csv
md5:f3cbe51d9ab36c9a1fa0ed8644f0569f
3.1 kB Download
Ingham_composite_BOM_data.csv
md5:4fdeb683b3fc984fb3f735ab48edd7e6
691.4 kB Download
Ldayi_prev.csv
md5:8305478d5fe06aea1ee4cbe9d16fd12f
2.0 kB Download
Lnannotis_prev.csv
md5:49dba26285ac9a171bc98fd54a2d6727
2.0 kB Download
Low_Isles_Lighthouse_BOM_data.csv
md5:88ea037ca1654d52b58c3d4f0a583c10
710.2 kB Download
Lrheocola_prev.csv
md5:8c49f1855faef4f767d8474a732f4769
2.0 kB Download
Lserrata_prev.csv
md5:9e14cc1eeb224cb4260a3060d1bb75d4
2.0 kB Download
Mount_Lewis_air_temps.csv
md5:8a461f07ae0b0b6d6ee60e51d62bef2e
594.7 kB Download
Murray_Kirrama_air_temps.csv
md5:4dfe6b6a9fabff6a0f2cb8eedbc13e93
479.7 kB Download
Occupancy_models.R
md5:207f40589f68dec3efd5724050b9698a
16.9 kB Download
Sites.csv
md5:029037348dd172f2b2f2c7bcfa832490
1.6 kB Download
Streamside_air_temp_data_collation.R
md5:0b01aa7234976b35e30a8acfea710fe5
15.8 kB Download
Streamside_air_temp_model.R
md5:9f0c89a11b68aedc6e242c2c7404514a
20.8 kB Download
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