Software Open Access
Seq (OOPSLA 2019 Artifact)
Shajii, Ariya;
Numanagić, Ibrahim;
Baghdadi, Riyadh;
Berger, Bonnie;
Amarasinghe, Saman
This is the artifact submitted alongside the Seq paper to OOPSLA 2019, which consists of a VM containing an alpha build of Seq, as well as a usage guide.
Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax and a host of domain-specific features and optimizations, Seq makes writing high-performance genomics software as easy as writing Python code, and achieves performance comparable to (and in many cases better than) C/C++.
Files
(3.6 GB)
335
35
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 335 | 335 |
| Downloads | 35 | 35 |
| Data volume | 82.5 GB | 82.5 GB |
| Unique views | 301 | 301 |
| Unique downloads | 15 | 15 |
Indexed in
- Publication date:
- August 21, 2019
- DOI:
-
- Keyword(s):
- programming language compiler domain-specific language bioinformatics genomics artifact
- Grants:
-
National Institutes of Health:
- Compressive genomics for large omics data sets: Algorithms applications & tools (1R01GM108348-01)
- XPS: FULL: DSD: Scalable High Performance with Halide and Simit Domain Specific Languages (1533753)
- License (for files):
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International