Software Open Access

Seq (OOPSLA 2019 Artifact)

Shajii, Ariya; Numanagić, Ibrahim; Baghdadi, Riyadh; Berger, Bonnie; Amarasinghe, Saman

This is the artifact submitted alongside the Seq paper to OOPSLA 2019, which consists of a VM containing an alpha build of Seq, as well as a usage guide.

Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax and a host of domain-specific features and optimizations, Seq makes writing high-performance genomics software as easy as writing Python code, and achieves performance comparable to (and in many cases better than) C/C++.

http://seq.csail.mit.edu

Files (3.6 GB)
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34.tgz
md5:e1fed55c258c322fa878e752bce3a9ef
3.6 GB Download
README.md
md5:499c4405a57781de5f6a7f5941876a94
7.7 kB Download
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