Published July 29, 2019
| Version v2
Dataset
Open
Phylogenetic comparative methods are problematic when applied to gene trees with speciation and duplication nodes: correcting for biases in testing the ortholog conjecture
Authors/Creators
- 1. Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland ; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland
Description
This repository contains “manuscript_dunn.RData” file, which is reproduced by using the files and scripts of Dunn et al. (Dunn CW, Zapata F, Munro C, Siebert S, Hejnol A (2018) Pairwise comparisons across species are problematic when analyzing functional genomic data. Proc Natl Acad Sci U S A 115: E409–E417. doi:10.1073/pnas.1707515115).
In this repository, we also supplied “Data_TMRR_latest.rda” file, containing the results generated by using our own scripts. Our scripts are available on GitHub: https://github.com/tbegum/Testing_the_ortholog_conjecture.