Data related to the article: Y. Norman et al., Science 365, eaax1030 (2019)
Authors/Creators
- 1. Department of Neurobiology, Weizmann Institute of Science, Rehovot, 76100, Israel.
- 2. Department of Neurosurgery, Donald and Barbara Zucker School of Medicine at Hofstra/Northwell, and Feinstein Institute for Medical Research, Manhasset, New York, 11030, USA.
Description
This data set contains intracranial EEG data, analysis code and results associated with the manuscript, "Hippocampal Sharp-wave Ripples Linked to Visual Episodic Recollection in Humans". [DOI: 10.1126/science.aax1030]
Data files (.mat) and associated scripts (.m) are divided into folders according to the subject of the analysis (e.g. ripple detection, ripple-triggered averages, multivariate pattern analysis etc.) and are all contained in the .zip file: “Norman_et_al_2019_data_and_code_zenodo.zip".
The code is written in Matlab R2018b and run on a desktop computer with a 3.4Ghz Intel Core i7-6700 CPU with 64GB RAM.
Matlab's Signal Processing Toolbox is required.
General notes:
1) The data does not contain identifying details about the patients, nor voice recordings.
2) Before running the analyses, make sure you set the correct paths in the "startup_script.m" located in the main folder where the zip file was extracted.
3) To run the code, the following open-source toolboxes are required:
- EEGLAB (https://sccn.ucsd.edu/eeglab/download.php), version: "eeglab14_1_2b".
- A. Delorme, S. Makeig, EEGLAB: An open source toolbox for analysis of single-trial EEG dynamics including independent component analysis. J. Neurosci. Methods. 134, 9–21 (2004).
- Mass Univariate ERP Toolbox (https://openwetware.org/wiki/Mass_Univariate_ERP_Toolbox), version: "dmgroppe-Mass_Univariate_ERP_Toolbox-d1e60d4".
- D. M. Groppe, T. P. Urbach, M. Kutas, Mass univariate analysis of event-related brain potentials/fields I: A critical tutorial review. Psychophysiology. 48, 1711–1725 (2011).
*** Make sure you download the relevant toolboxes and save them in the "path_to_toolboxes" before running the analysis scripts (see "startup_script.m")
4) Code developed by other authors (redistributed here as part of the analysis code):
- DRtoolbox (https://lvdmaaten.github.io/drtoolbox/), version: 0.8.1b.
- L.J.P. van der Maaten, E.O. Postma, and H.J. van den Herik. Dimensionality Reduction: A Comparative Review. Tilburg University Technical Report, TiCC-TR 2009-005, 2009.
- Scott Lowe / superbar (https://github.com/scottclowe/superbar), version: 1.5.0.
- Oliver J. Woodford, Yair M. Altman / export_fig (https://github.com/altmany/export_fig).
Files
Norman_et_al_2019_data_and_code_zenodo.zip
Additional details
Related works
- Is supplement to
- 10.1126/science.aax1030 (DOI)
References
- Y. Norman et al., Science 365, eaax1030 (2019). DOI: 10.1126/science.aax1030