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ELIXIR-EXCELERATE D6.4: Report on assessment criteria and standardisation of metagenome assembled genomes (MAGs) from Marine samples

Finn, Robert; Mitchell, Alex; Cochrane, Guy; Burgin, Josephine; Willassen, Nils Peder

  • Demonstration of the application of completeness/contamination estimates on metagenome assembled genomes (MAGs) produced as part of WP6. These results of these estimates are discussed in relationship of the MIMAGs and MISAGs standards.

  • Survey of the genomes, MAGs and single amplified genomes (SAGs) found in the MAR database. This demonstrates that many of the draft genomes are heavily contaminated and/or incomplete.

  • Description of the new infrastructure in the European Nucleotide Archive, and how this has been structured to accommodate the data generated within WP6 (and more broadly).

  • We also highlight the current limitations and issues of the tools employed to estimate completeness and contamination.

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