Dataset Open Access

CTCF loop analysis and prediction scripts and datasets

Oti, Martin

Additional files accompanying the study of experimental and predicted CTCF loops in human cell lines by Oti et al.

ctcfloopscripts_v1.0.zip: Scripts used in the analysis of CTCF-mediated loops in human cell lines; both experimental ChIA-PET loops as well as predicted loops based on ChIP-seq data. Zipped file.

ctcf_predictedloops_ENCODE_chipseq_datasets.tar.gz: Predicted CTCF loops for 100 ENCODE ChIP-seq datasets. Gzipped tar file.

fimo_ctcfmotifs_MA0139_hg19_2.5e-4.bed.gz: genome-wide CTCF motifs in human genome (hg19) detected by FIMO tool.

Files (214.0 MB)
Name Size
ctcf_predictedloops_ENCODE_chipseq_datasets.tar.gz
md5:2f513f46277311099b3885ed5c2b7d9b
188.3 MB Download
ctcfloopscripts_v1.0.zip
md5:f7b05b173d2c8150c1f7146810a80b49
70.9 kB Download
fimo_ctcfmotifs_MA0139_hg19_2.5e-4.bed.gz
md5:ad7fe5a5aef9ce9f87170d8502c45b38
25.6 MB Download
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