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Dataset Open Access

Reference-based RNA-seq data analysis (training data)

Batut, Bérénice; Videm, Pavankumar; Erxleben, Anika; Houwaart, Torsten; Grüning, Björn

RNA-seq (RNA sequencing) uses high-throughput (HTS) data to reveal the presence and quantity of RNA in a biological sample at a given moment in time. 

In the training available at http://galaxyproject.github.io/RNA-Seq/tutorials/ref_based, we introduce the bioinformatics methods to analyze RNA-seq data using a reference genome. The toy datasets were extracted from the study of Brooks et al. 2011.

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dexseq.gtf
md5:51df689fc40c62fe062f6338f1e1c0f6
61.7 kB Download
Drosophila_melanogaster.BDGP5.78.gtf
md5:e07b8dcbd4f4f7602feeba0d5ed1698e
160.8 MB Download
GSM461176_untreat_single.deseq.counts
md5:409bc406c787b0f652ba0778e1e3eaa9
231.3 kB Download
GSM461176_untreat_single.dexseq.counts
md5:86922557d7f3b94c0d127229e29bf770
1.5 MB Download
GSM461176_untreat_single_chr4.fastq
md5:498eebde1f9a4827599c7b6296614ad0
5.5 MB Download
GSM461177_untreat_paired.deseq.counts
md5:698a94faf9aec4a033aa070973e72d03
234.8 kB Download
GSM461177_untreat_paired.dexseq.counts
md5:cdb6c43cca2a260de60a94a896115a63
1.5 MB Download
GSM461177_untreat_paired_chr4_R1.fastq
md5:62b37377b928ef676adc0aff6964f109
5.8 MB Download
GSM461177_untreat_paired_chr4_R2.fastq
md5:e3ddbb0717aca087ff66e52ec816666b
5.8 MB Download
GSM461178_untreat_paired.deseq.counts
md5:a3aaf20dd237a9ad6e7fcb96bef9de4b
235.1 kB Download
GSM461178_untreat_paired.dexseq.counts
md5:c1c45948a0855c431042551e8b304293
1.5 MB Download
GSM461178_untreat_paired_chr4_R1.fastq
md5:3e1b9ffda3d34efe1d2bdd9b4abcdfed
5.9 MB Download
GSM461178_untreat_paired_chr4_R2.fastq
md5:6cc99dffba9d2f8b8bb9fe8ce7461359
5.9 MB Download
GSM461179_treat_single.deseq.counts
md5:6d89c23cb4a2491bb1aeab3b92e3870b
231.7 kB Download
GSM461179_treat_single.dexseq.counts
md5:31030af6a513c1db6444502adc238fac
1.5 MB Download
GSM461179_treat_single_chr4.fastq
md5:b8afd55aedff15fe84da531b26930e78
8.5 MB Download
GSM461180_treat_paired.deseq.counts
md5:ecd8194f283cc5a4d3e0a3f0d6841984
234.6 kB Download
GSM461180_treat_paired.dexseq.counts
md5:d517008dd809ed8e6179d360b07907e0
1.5 MB Download
GSM461180_treat_paired_chr4_R1.fastq
md5:a75a293c70e3b075f715fbeb9a80c73e
6.1 MB Download
GSM461180_treat_paired_chr4_R2.fastq
md5:c9835c3e8ec99b8aa91f5c01aa30bc41
6.1 MB Download
GSM461181_treat_paired.deseq.counts
md5:44ef8ab22aebd45b2c7aec4a01e5823a
235.6 kB Download
GSM461181_treat_paired.dexseq.counts
md5:bb4bd5d3c75e5e76b1b329d70f938f85
1.5 MB Download
GSM461181_treat_paired_chr4_R1.fastq
md5:4c1cda7c00a34f8c66eb503292aa9b66
6.3 MB Download
GSM461181_treat_paired_chr4_R2.fastq
md5:944c753f0779b17379aa6fb8a6890641
6.3 MB Download
GSM461182_untreat_single.deseq.counts
md5:472778243137d61d538bc6fc16552b78
231.9 kB Download
GSM461182_untreat_single.dexseq.counts
md5:71fb2195d06a045ba5202cc7188094b3
1.5 MB Download
GSM461182_untreat_single_chr4.fastq
md5:ff9202cf391ea0f75daa3ec5f2f0b092
10.8 MB Download
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