Published August 9, 2015 | Version v1.0
Software Open

Gene–Tissue relationships from the TISSUES database

Description

We have completed an initial processing of the TISSUES data (repository, notebook). The main output of our analysis is merged.tsv.gz, a table where each row is a tissue (Uberon)--gene (Entrez) pair. For each pair, we provide 5 scores:

  • score_text: score from the text mining channel
  • score_knowledge: score from the UniProtKB/knowledge channel
  • score_experiment: integrated score from the experimental channel
  • score_experiment_unbiased: integrated score from the experimental channel without immunohistochemical staining data from the Human Protein Atlas
  • score_integrated: integrated score combining everything

Files

tissues-v1.0.zip

Files (116.2 MB)

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