Published August 9, 2015
| Version v1.0
Software
Open
Gene–Tissue relationships from the TISSUES database
Creators
Description
We have completed an initial processing of the TISSUES data (repository, notebook). The main output of our analysis is merged.tsv.gz, a table where each row is a tissue (Uberon)--gene (Entrez) pair. For each pair, we provide 5 scores:
- score_text: score from the text mining channel
- score_knowledge: score from the UniProtKB/knowledge channel
- score_experiment: integrated score from the experimental channel
- score_experiment_unbiased: integrated score from the experimental channel without immunohistochemical staining data from the Human Protein Atlas
- score_integrated: integrated score combining everything
Files
tissues-v1.0.zip
Files
(116.2 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/dhimmel/tissues/tree/v1.0 (URL)