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Gene–Tissue relationships from the TISSUES database

Daniel Himmelstein; Lars Juhl Jensen

We have completed an initial processing of the TISSUES data (repository, notebook). The main output of our analysis is merged.tsv.gz, a table where each row is a tissue (Uberon)--gene (Entrez) pair. For each pair, we provide 5 scores:

  • score_text: score from the text mining channel
  • score_knowledge: score from the UniProtKB/knowledge channel
  • score_experiment: integrated score from the experimental channel
  • score_experiment_unbiased: integrated score from the experimental channel without immunohistochemical staining data from the Human Protein Atlas
  • score_integrated: integrated score combining everything

Files (116.2 MB)
Name Size
tissues-v1.0.zip md5:b4e3a6cd63ff2463e3b0ddb80af66cef 116.2 MB Download

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