Published August 9, 2015
| Version v1.0
Software
Open
Gene–Tissue relationships from the TISSUES database
Authors/Creators
Description
We have completed an initial processing of the TISSUES data (repository, notebook). The main output of our analysis is merged.tsv.gz, a table where each row is a tissue (Uberon)--gene (Entrez) pair. For each pair, we provide 5 scores:
- score_text: score from the text mining channel
- score_knowledge: score from the UniProtKB/knowledge channel
- score_experiment: integrated score from the experimental channel
- score_experiment_unbiased: integrated score from the experimental channel without immunohistochemical staining data from the Human Protein Atlas
- score_integrated: integrated score combining everything
Files
tissues-v1.0.zip
Additional details
Related works
- Is supplement to
- https://github.com/dhimmel/tissues/tree/v1.0 (URL)