Dataset Open Access

GTDB and RefSeq-RDP databases parsed for species assignment

Sousa, António GG

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Sousa, António GG

GTDB and RefSeq-RDP databases parsed for the addSpecies() dada2 function. Both databases were parsed with `parsing_DB_dada2_spp_assign.py` python script using as input both databases downloaded at: https://zenodo.org/record/2541239#.XM2UgCOZPOQ. The python script and a detailed description explaining the code and databases versions can be found at: https://github.com/antonioggsousa/GTDB-RefSeq-RDP-assign-spp-dada2

 

Files (8.5 MB)
Name Size
GTDB_dada2_assignment_species.fa.gz
md5:e94d907d0b0b13afc183fdb151cca8de
4.8 MB Download
RefSeq-RDP_dada2_assignment_species.fa.gz
md5:b499d7a4ee70990256e2e9a1fcb735bd
3.8 MB Download
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