Published March 26, 2019 | Version March26th2019
Dataset Open

Genotyping-by-sequencing (GBS) dataset for genome wide associations of growth, phenology and plasticity traits in willow (Salix viminalis (L.))

Authors/Creators

  • 1. Department of Plant Biology, Swedish University of Agricultural Sciences
  • 2. Department of Crop Production Ecology, Swedish University of Agricultural Sciences

Description

These vcf-files constitute underlying raw data material for the manuscript "Genome wide associations of growth, phenology and plasticity traits in willow (Salix viminalis (L.))". For more detailed information please consult the README file in the repository.

Notes

The generation of this data was supported by the Swedish Energy Agency, grants no: 30599-3, and the NJ-Faculty at the Swedish University of Agricultural Sciences.

Files

Salix-AssMap-GBS-SNPs.README.txt

Files (472.9 MB)

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md5:81f480ed829411180a8e2d994e5114a0
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md5:eb6c6f223f0cf92a082bc0901db27d43
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md5:9f17096377fe645413988ac01ee59090
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Additional details

Related works

Cites
http://phygozome.jgi.doe.gov/pz/portal.html#! info? alias=Org_Spurpurea (URL)

References

  • Elshire et al. (2011). A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species. PLoS One 6, e19379. doi: 10.1371/journal.pone.0019379
  • Glaubitz et al. (2014). TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline. PLoS One 9, e90346. doi: 10.1371/journal.pone.0090346
  • Zhou et al. (2018). Characterization of a large sex determination region in Salix purpurea L. (Salicaceae). Molecular Genetics & Genomics 293:1437-1452. doi: 10.1007/s00438-018-1473-y