Supplementary data files for Manzano-Marín 2019 "No evidence for Wolbachia as a nutritional co-obligate endosymbiont in the aphid Pentalonia nigronervosa"
Authors/Creators
- 1. INRA UMR 1062 Centre de Biologie pour la Gestion des Populations, Montpellier, France
Description
Supplementary data for Manzano-Marín 2019 "No evidence for Wolbachia as a nutritional co-obligate endosymbiont in the aphid Pentalonia nigronervosa".
The data in "supplementary_data.tar.gz" consists of six folders:
1) "Buchnera_GenBank_annotation”: GenBank-formatted file of the annotated genes of Buchnera from Pentalonia nigronervosa (BPn).
2) "Buchnera_gene_BLAST_search”: Tabular BLAST output files and FASTA-formatted files of the identified Buchnera Bpn genes.
3) "P_nigronervosa_blastx_binning”: Tabular BLAST output files and FASTA-formatted files of the Buchnera, Wolbachia, and mitochondrion bins.
4) "P_nigronervosa_BOWTIE_map_vs_bins": BAM-formatted alignment files for read libraries vs. Buchnera and Wolbachia bins from Pentalonia nigronervosa.
5) "P_nigronervosa_BOWTIE_map_vs_genes": BAM-formatted alignment files for read libraries vs. genes from Buchnera and Wolbachia bin from Pentalonia nigronervosa.
6) "P_nigronervosa_SPAdes_assembly": Output files for pooled SPAdes assembly.
Also, the filtered and trimmed FASTQ files used for genome assembly can be found in the comrpessed file "read_files_clean.tar.gz".