Dataset Open Access

VCF files for 100 high coverage baboon genomes from the Southwest National Primate Research Center

Jacqueline A. Robinson; Saurabh Belsare; Shifra Birnbaum; Deborah E. Newman; Jeannie Chan; Jeremy P. Glenn; Betsy Ferguson; Laura A. Cox; Jeffrey D. Wall

Catalog of SNP and small indel variation in 100 high coverage (>20X) whole genome sequences from baboons (genus Papio) at the Southwest National Primate Research Center (SNPRC). These files use the Panu_2.0 baboon reference genome. See "Analysis of 100 high coverage genomes from a pedigreed captive baboon colony" by Robinson et al. 2019 for further details.

Files (44.4 GB)
Name Size
100baboons_highcoverage_annotated_1.vcf.gz
md5:3965b7e4890624f74a8fbe255cc09b29 		2.7 GB Download
100baboons_highcoverage_annotated_1.vcf.gz.tbi
md5:000404eb0a0ae191794b62fbc8a5e301 		212.3 kB Download
100baboons_highcoverage_annotated_10.vcf.gz
md5:704942f73ee54dce35c556674593e324 		1.3 GB Download
100baboons_highcoverage_annotated_10.vcf.gz.tbi
md5:941b5accd5f28467f935df0c728c69af 		88.3 kB Download
100baboons_highcoverage_annotated_11.vcf.gz
md5:4c2626ac08a65cfa2b63ffa8c60f930e 		1.7 GB Download
100baboons_highcoverage_annotated_11.vcf.gz.tbi
md5:82c72aad43f682ce05430f056e315ad1 		127.6 kB Download
100baboons_highcoverage_annotated_12.vcf.gz
md5:99ac384c7d2b2b56e42cce51a12707e9 		1.2 GB Download
100baboons_highcoverage_annotated_12.vcf.gz.tbi
md5:ccddd104417c973787fc8fe3532511c2 		101.1 kB Download
100baboons_highcoverage_annotated_13.vcf.gz
md5:8cb8b3b768d29c8114af2f0554c6f6e0 		1.7 GB Download
100baboons_highcoverage_annotated_13.vcf.gz.tbi
md5:e407d1f323393bf2e03a02de0c6800bb 		124.1 kB Download
100baboons_highcoverage_annotated_14.vcf.gz
md5:af9286d37c355f613145c5644ad1d5fc 		1.6 GB Download
100baboons_highcoverage_annotated_14.vcf.gz.tbi
md5:eb1dbfe098ad7599d9d17794c17d6f53 		119.6 kB Download
100baboons_highcoverage_annotated_15.vcf.gz
md5:3fd0c3330032ee2492e9c8f4cf370e0a 		1.4 GB Download
100baboons_highcoverage_annotated_15.vcf.gz.tbi
md5:7a0f458a3cd4b43bb9cb6b26a4ac576b 		104.3 kB Download
100baboons_highcoverage_annotated_16.vcf.gz
md5:9b77c67a7b8d4493e4e815c001e74f03 		1.0 GB Download
100baboons_highcoverage_annotated_16.vcf.gz.tbi
md5:ce53db8cc5dbafa2b39e1afe1c3e672b 		72.8 kB Download
100baboons_highcoverage_annotated_17.vcf.gz
md5:6831bcb78a698e43199093d05c7f972d 		1.3 GB Download
100baboons_highcoverage_annotated_17.vcf.gz.tbi
md5:4cb3df9e567f4a96ebfd4c339d91294e 		88.1 kB Download
100baboons_highcoverage_annotated_18.vcf.gz
md5:b8889736b04927daa75fa6aac631e727 		986.2 MB Download
100baboons_highcoverage_annotated_18.vcf.gz.tbi
md5:04a5a10ba9e88fdb3cab1910221903a2 		70.7 kB Download
100baboons_highcoverage_annotated_19.vcf.gz
md5:bbc3014083afcca575bbe268a8a4d0e4 		898.8 MB Download
100baboons_highcoverage_annotated_19.vcf.gz.tbi
md5:a7070076409a83d1a061ea8ba7c90cec 		48.2 kB Download
100baboons_highcoverage_annotated_2.vcf.gz
md5:a5a26235fa9057eaf5f1b2a8828ff1d2 		2.3 GB Download
100baboons_highcoverage_annotated_2.vcf.gz.tbi
md5:c18987c9074acd7be600ec5bd0514847 		180.7 kB Download
100baboons_highcoverage_annotated_20.vcf.gz
md5:c90248a4b0ad7e870dccd04a48a3e42a 		1.0 GB Download
100baboons_highcoverage_annotated_20.vcf.gz.tbi
md5:c2fb3b72bb51da88a011427dec32b0fe 		70.2 kB Download
100baboons_highcoverage_annotated_3.vcf.gz
md5:1b957896a9e8bac2b2c5b7bf08e5069c 		2.3 GB Download
100baboons_highcoverage_annotated_3.vcf.gz.tbi
md5:0190149636a274eca6329bf77f80ba96 		174.1 kB Download
100baboons_highcoverage_annotated_4.vcf.gz
md5:d84fde0d55553c363fa28f885f1d66b0 		2.2 GB Download
100baboons_highcoverage_annotated_4.vcf.gz.tbi
md5:3ff2600d18f52f735f7a673e4b88e7f7 		159.8 kB Download
100baboons_highcoverage_annotated_5.vcf.gz
md5:1212235870d07fcc042489fd9c6abfe0 		2.4 GB Download
100baboons_highcoverage_annotated_5.vcf.gz.tbi
md5:3231c1af0540df6f28dc5972b39cd4b3 		172.3 kB Download
100baboons_highcoverage_annotated_6.vcf.gz
md5:01b24d35d15db0381e89ab29defeea0b 		2.2 GB Download
100baboons_highcoverage_annotated_6.vcf.gz.tbi
md5:b1d55f131c77f9b9a06f0579abee2c14 		168.3 kB Download
100baboons_highcoverage_annotated_7.vcf.gz
md5:6df6ab41230921089639d3b893937876 		2.0 GB Download
100baboons_highcoverage_annotated_7.vcf.gz.tbi
md5:da441e617717c8911b02aac503fe9fc4 		156.7 kB Download
100baboons_highcoverage_annotated_8.vcf.gz
md5:4d448ecd44c649f3156cfcf0a17eb688 		1.8 GB Download
100baboons_highcoverage_annotated_8.vcf.gz.tbi
md5:6aecf08fc1d6bfce8dc55f36919537e1 		135.3 kB Download
100baboons_highcoverage_annotated_9.vcf.gz
md5:61b832391b03d6702a71aaa04073d9c9 		1.6 GB Download
100baboons_highcoverage_annotated_9.vcf.gz.tbi
md5:6f12ca8701d6c40e549bad62d4b2b199 		121.5 kB Download
100baboons_highcoverage_annotated_MT.vcf.gz
md5:51ef7d6f4587d57e33ec0e04e84c7b9f 		2.2 MB Download
100baboons_highcoverage_annotated_MT.vcf.gz.tbi
md5:9c9c70e66f101aab15a208c8c45756e5 		123 Bytes Download
100baboons_highcoverage_annotated_scaffs.vcf.gz
md5:b001f3c8c77ed8b1491a31f88df778a6 		9.6 GB Download
100baboons_highcoverage_annotated_scaffs.vcf.gz.tbi
md5:5274d8966f8c9bce86473bf801cb10cf 		1.1 MB Download
100baboons_highcoverage_annotated_X.vcf.gz
md5:c87976d98f1012384c8523baff5a6ad7 		1.1 GB Download
100baboons_highcoverage_annotated_X.vcf.gz.tbi
md5:a6db703bb9f9192fa4bf6da79c1cc35c 		138.4 kB Download
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Publication date:
March 1, 2019
DOI:
10.5281/zenodo.2583266

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