Dataset Open Access

Data for Galaxy CLIP-Seq Training Material

Florian Heyl

The eCLIP data provided here is a subset of the eCLIP data of RBFOX2 from a study published by Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). The dataset contains the first biological replicate of RBFOX2 CLIP-seq and the input control experiment (*fastq files). The data was changed and downsampled to reduce data processing time, thus the datasets does not correspond to the original data pulled from Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). Also included is a text file (.txt) encompassing the chromosome sizes of hg19 and hg38 obtained from UCSC (http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.chrom.sizes, http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/hg38.chrom.sizes) and a genome annotation for hg19 (.gtf) taken from Ensembl (http://ftp.ensemblorg.ebi.ac.uk/pub/release-74/gtf/homo_sapiens/) and for hg38 taken from the Galaxy libraries (https://usegalaxy.eu/library/list#folders/F30cab321d898d2fb/datasets/9ba790aa79c9cf23). The data is used for a galaxy training course about CLIP-Seq data analysis. 

Files (2.2 GB)
Name Size
hg19_chr_sizes.txt
md5:b3b0fcf79b5477ab0b3af02e81eac8dc
2.0 kB Download
hg38_chr_sizes.txt
md5:a088bac41bcc2495291a973611da83cb
11.7 kB Download
Homo_sapiens.GRCh37.74.gtf
md5:cfee5b3973b7bd5f63af5e8ed8c960c6
522.6 MB Download
Homo_sapiens.GRCh38.87.gtf
md5:4d4ad1ab5546e541204b5c03063bcc11
1.4 GB Download
RBFOX2-204-CLIP_S1_R1_RBFOX2.fastq
md5:64f7581e25dec4accad3bce6a68b5361
71.7 MB Download
RBFOX2-204-CLIP_S1_R2_RBFOX2.fastq
md5:9eb675aab90fcd880f242c0429d297ab
78.5 MB Download
RBFOX2-204-INPUT_S2_R1.fastq
md5:e9b4afae2368d6bc84480ec0903ca929
78.5 MB Download
RBFOX2-204-INPUT_S2_R2.fastq
md5:6f3bb4b3a6c3b395d54187676cfe454a
78.5 MB Download
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