Supplementary phylogenetic data for Manzano-Marín et. al. 2020 "Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids' di-symbiotic systems"
Authors/Creators
- 1. INRA UMR 1062 Centre de Biologie pour la Gestion des Populations, Montpellier, France
Description
Supplementary data for Manzano-Marín et. al. 2019 "Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids' di-symbiotic systems".
The data set consists of four folders:
1) "Buchnera_phylo”: PHYLIP-formatted file used for phylogenetic reconstruction of Buchnera and resulting tree in NEWICK format.
2) "Erwinia_phylo”: PHYLIP-formatted file used for phylogenetic reconstruction of Erwinia and resulting tree in NEWICK format.
3) "Hamiltonella_phylo”: FASTA-formatted nucleotide alignment files of each gene and NEXUS-formatted files used for Bayesian phylogenetic reconstruction of Hamiltonella symbionts.
4) "HGT_genes": FASTA-formatted nucleotide alignment files of each horizontally transferred gene and non-horizontally transferred genes nupC, and gpmA. Also, NEXUS-formatted files used for Bayesian phylogenetic reconstruction and of resulting trees.
5) "Tn3_pylo": FASTA-formatted amino acid alignment files of mobile elements related to the Tn3 family resolvase/invertase found in Hamiltonella-associated Erwinia haradaeae symbionts. Also, NEXUS-formatted files used for Bayesian phylogenetic reconstruction and of resulting trees.
Notes
Files
Files
(2.9 MB)
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md5:73606a9915cf2157393b2a521c87a0cf
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Additional details
Related works
- Is supplement to
- Preprint: 10.1101/556274 (DOI)
- Journal article: 10.1038/s41396-019-0533-6 (DOI)