Published February 12, 2019 | Version v1

RZooRoH: an R package to characterize individual genomic autozygosity and identify homozygous-by-descent segments

Authors/Creators

Description

these are two files used to test the RZooRoH package in the manuscript:
RZooRoH: an R package to characterize genomic autozygosity and identify homozygous-by-descent segments
A.R. Bertrand, N.K. Kadri, L. Flori, M. Gautier and T. Druet

Each row represents a SNP. The files contain first 5 information columns followed by the genotyes (1 row per individual):
1 Chromosome number
2 Marker name
3 Position in bp
4 Allele 1
5 Allele 2

Genotypes are coded as 0, 1 and 2 for AA, AB and BB and 9 for missing.

The file geno_sim15_5col.txt contains the simulated genotypes: 25000 markers and 500 individuals.
The file filtered_soay_5col.txt contains the sheep genotype data: 47365 markers and 110 individuals.

The origin of the files is described in the paper.
The simulated data set is from Druet and Gautier (2017) whereas the sheep data comes from Kijas et al. (2012).

Files

data_testing_rzooroh.zip

Files (4.4 MB)

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md5:e1ce0ed35c7f5f96779b80ac22cd50dd
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Additional details

References

  • A.R. Bertrand, N.K. Kadri, L. Flori, M. Gautier and T. Druet (2019) Methods in Ecology and Evolution