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Published January 26, 2019 | Version v2.3.0
Software Open

ropensci/RNeXML: RNeXML v2.3.0

Authors/Creators

  • 1. UC Berkeley
  • 2. Center for Genomic and Computational Biology (GCB), Duke University
  • 3. Naturalis Biodiversity Center
  • 4. rOpenSci
  • 5. Google
  • 6. @carpentries
  • 7. University of Vermont
  • 8. @NCEAS

Description

An extensive and rapidly growing collection of richly annotated phylogenetics data is now available in the NeXML format. NeXML relies on state-of-the-art data exchange technology to provide a format that can be both validated and extended, providing a data quality assurance and adaptability to the future that is lacking in other formats. See Vos et al 2012 for further details on the NeXML format.

Release Notes

This release addresses several aspects improving the handling of metadata:

  • add_meta() now works for trees and characters (#213, PR #217)
  • Handles nested meta elements properly (#196, PR #197)

Misc fixes:

  • enable handling of rootEdge (#207, PR #218)
  • Replaces taxize backend with faster alternative taxadb method. (#224, PR #226). This remains only a suggested package and has much lighter dependencies as well.
  • add hex

Files

ropensci/RNeXML-v2.3.0.zip

Files (1.8 MB)

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md5:11a0e7e108861ca0bd8ef5f922de2c59
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Additional details

Related works

Is supplement to
https://github.com/ropensci/RNeXML/tree/v2.3.0 (URL)