Published January 22, 2019
| Version v1
Dataset
Open
Crystal structure of d(CCGGGGTACCCCGG)2 at 1.4 Å resolution.
Authors/Creators
- 1. Centre of Advanced Study in Crystallography and Biophysics, University of Madras
- 2. Institut Européen de Chimie et Biologie (IECB), France
Description
The X-ray crystal structure of the DNA tetradecamer sequence d(CCGGGGTACCCCGG)2 is reported at 1.4 Å resolution in the tetragonal space group P41212. The sequence was designed to fold as a four-way junction. However, it forms an A-type double helix in the presence of barium chloride. The metal ion could not be identified in the electron-density map. The crystallographic asymmetric unit consists of one A-type double helix with 12 base pairs per turn, in contrast to 11 base pairs per turn for canonical A-DNA. A large number of solvent molecules have been identified in both the grooves of the duplex and around the backbone phosphate groups.
Notes
Acknowledgement to Department of Biotechnology, Government of India for data collection facilities at BM14 beamline, ESRF, France.
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Additional details
Related works
- Is cited by
- 10.2210/pdb5WV7/pdb (DOI)
- Is supplement to
- 10.1107/S2053230X17004770 (DOI)
References
- Gabadinho et al. (2010). J Synchrotron Radiat. 17: 700–707.