Data from: Insights into the genomics of clownfish adaptive radiation: genetic basis of the mutualism with sea anemones

Genomic data of 9 clownfish (Amphiprion akallopisos, A.  bicinctus, A. melanopus, A. nigripes, A. ocellaris, A. preideraion, A. polymnus, A. sebae, Premnas biaculeatus) species and 1 damselfish species (Pomacentrus moluccensis), presented in " Insights into the genomics of clownfish adaptive radiation: genetic basis of the mutualism with sea anemones".

For each species, the following files are available:

Species_genome.fasta: Genome assembly of the species in fasta format. The genome was obtained using Illumina paired-end reads,  following a reference-based method. For more information, please refer to the publication

Species_genome.Annotation.gff3: Structural genome annotation of the species, in gff3 format. Structural annotation was obtained with a combination of ab initio and RNAseq-data based approaches. Fina gene models were obtained with MAKER2. For more information, please refer to the publication

Species_genome.proteins.uniprot.fa: Predicted protein sequences from the genome assembly of the species, in fasta format. Each protein is annotated with the best blast hit with SwissProt database. For more information, please refer to the publication

Species_genome.transcripts.uniprot.fa: Predicted coding sequences (CDS) from the genome assembly of the species, in fasta format. Each CDS is annotated with the best blast hit with SwissProt database. For more information, please refer to the publication

For Amphiprion ocellaris data, additional to the files presented above, we provided as well the secondary results of the genome assembly using a de novo strategy (Aocellaris_GenomeDeNovo.fasta), its structural annotation (Aocellaris_GenomeDeNovo.Annotation.gff3), and its predicted protein (Aocellaris_GenomeDeNovo.proteins.uniprot.fa) and CDS (Aocellaris_GenomeDeNovo.transcripts.uniprot.fa) sequences.  For more information, please refer to the publication