Published January 18, 2017 | Version v1
Software Open

SELDOM V1.0.3

  • 1. Bioprocess Engineering Group, Spanish National Research Council
  • 2. Centre of Biological Engineering, University of Minho, Braga, Portugal
  • 3. Joint Research Center for Computational Biomedicine, RWTH-Aachen University, Aachen, Germany

Description

SELDOM stands for enSEmbLe of Dynamic lOgic-based Models. SELDOM is framework for building predictive signalling models that combines mutual information, ensemble modelling, logic-based ODEs and optimization. Here we provide a short manual on how to use SELDOM both for reproducing our results and adapting SELDOM to solve a new problem. The code is not distributed with the purpose of being a user friendly software. It requires a LINUX cluster as well as some knowledge in LINUX and R programming.

Files

S1_File.zip

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Additional details

Funding

NICHE – Network for Integrated Cellular Homeostasis 289384
European Commission