Software Open Access

gene-ontology: Initial zenodo release

Daniel Himmelstein; Casey Greene; Venkat Malladi; Frederic Bastian; Sergio Baranzini

This project provides easy-to-use Gene Ontology annotations. Annotations relate GO Terms with Entrez Genes. We provide genes as Entrez GeneIDs and as symbols.

Users choose from the following options:

  • species: which species to retrieve annotations for
  • evidence: whether to use all annotations or annotations from experimental evidence only
  • propagation: whether to include only direct annotations or infer annotations based on ontology structure

The project includes a website for browsing and downloading annotation files.

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