weswong/IBD-HMM: IBD-HMM

IBD-HMM used in the manuscript Genetic relatedness analysis reveals the cotransmission of genetically related Plasmodium falciparum parasites in Thies, Senegal. Note that this version is no longer being actively maintained and has been uploaded for archival reasons. Those seeking to use the most up to date version should refer to https://github.com/glipsnort/hmmIBD