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Published April 28, 2026 | Version 2.0
Software Open

JosephLalli/phasing_T2T: v2.0

Authors/Creators

  • 1. Werling Lab

Description

Code and input datasets (excluding those related to recombination maps) used to generate resubmitted phased 1KGP T2T paper "A T2T-CHM13 recombination map and globally diverse haplotype reference panel improves phasing and imputation"

What's Changed

  • Updated imputation evaluation results to reflect use of latest version of LiftoverIndel
  • Code has been completely refactored to improve readability and ensure portability
  • Docker container to make replication easier
  • Better documentation of workflow used to generate analysis

Full Changelog: https://github.com/JosephLalli/phasing_T2T/compare/v1.1...v2.0

Files

Files (38.0 GB)

Name Size Download all
md5:7e1dfbd2d1f729361b89de88f941f2f1
38.0 GB Download

Additional details

Related works

Is published in
Publication: 10.1101/2025.02.24.639687 (DOI)
Is supplement to
Software: https://github.com/JosephLalli/phasing_T2T (URL)

Software

Repository URL
https://github.com/JosephLalli/phasing_T2T
Programming language
Python