A new species of the genus Typhlomys Milne-Edwards, 1877 (Rodentia, Platacanthomyidae) from Fanjing Mountain, Guizhou, China
Authors/Creators
- 1. College of Life Sciences, Sichuan Normal University, Chengdu, China
- 2. Administrative Bureau of Fanjingshan National Nature Reserve, Guizhou, China
- 3. College of Agriculture and Forestry Engineering and Planning, Guizhou Provincial Key Laboratory of Biodiversity Conservation and Utilization in the Fanjing Mountain Region, Tongren University, Tongren, China
- 4. Sichuan Academy of Forestry, Chengdu, China
Description
During a field survey of small mammals on Fanjing Mountain in Guizhou Province, China, we collected five specimens of Typhlomys. To assess their taxonomic status, we performed phylogenetic analyses using three mitochondrial genes (Cytb, COI, and ND2) and two nuclear genes (GHR and IRBP). We also compared the cranial and dental morphology of these specimens with those of other known Typhlomys species. Our results indicate that the specimens represent a new species, described herein as Typhlomys zhengkuni sp. nov. Phylogenetic analyses suggest that the new species forms a distinct clade sister to T. taxuansis. The Kimura 2-parameter (K2P) genetic distances based on Cytb between the new taxon and other species of Typhlomys ranged from 8.2% to 17.9%, supporting its status as a distinct lineage. Morphologically, Typhlomys zhengkuni sp. nov. is most similar to T. daloushanensis but can be distinguished by its lower molars. However, given the low nodal support for its sister relationship with T. taxuansis, the precise phylogenetic position of this new species requires further investigation using additional molecular markers and specimens.
Files
ZSE_article_181212.pdf
Files
(3.3 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:9e4645af8dc2e50d96a14fef678c572a
|
3.2 MB | Preview Download |
|
md5:e528cb2dce5b29dc8118517b7b8c440e
|
156.8 kB | Preview Download |
Linked records
Additional details
References
- Abramov AV, Aniskin VM, Rozhnov VV (2012) Karyotypes of two rare rodents, Hapalomys delacouri and Typhlomys cinereus (Mammalia, Rodentia), from Vietnam. ZooKeys 164: 41–49. https://doi.org/10.3897/zookeys.164.1785
- Abramov AV, Balakirev AE, Rozhnov VV (2014) An enigmatic pygmy dormouse: molecular and morphological evidence for the species taxonomic status of Typhlomys chapensis (Rodentia: Platacanthomyidae). Zoological Studies 53: 34. https://doi.org/10.1186/s40555-014-0034-2
- Balakirev A, Phuong B, Rozhnov V (2024) Typhlomys taxuansis (Rodentia, Platacanthomyidae): new species of the genus from northern Vietnam with notes on conservation status and distribution. Biodiversity Data Journal 12: e133363. https://doi.org/10.3897/BDJ.12.e133363
- Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu CH, Xie D, Suchard MA, Rambaut A, Drummond AJ (2014) BEAST 2: A software platform for bayesian evolutionary analysis. PLoS Computational Biology 10(4): e100353. https://doi.org/10.1371/journal.pcbi.1003537
- Cheng F, He K, Chen ZZ, Zhang B, Wan T, Li JT, et al. (2017) Phylogeny and systematic revision of the genus Typhlomys (Rodentia, Platacanthomyidae), with description of a new species. Journal of Mammalogy 98(3): 731–743. https://doi.org/10.1093/jmammal/gyx016
- Chen SD, Tang KY, Wang XM, Li FJ, Fu CK, Liu Y, Faiz AUH, Jiang XL, Liu SY (2022) Multi-locus phylogeny and species delimitations of the striped-back shrew group (Eulipotyphla: Soricidae): implications for cryptic diversity, taxonomy and multiple speciation patterns. Molecular Phylogenetics and Evolution 117: 107619. https://doi.org/10.1016/j.ympev.2022.107619
- Deng Y, liu Q, Wang XM et al. (2025) Molecular phylogeny and taxonomy of the Sicista concolor group (Mammalia, Rodentia, Sicistidae) with the description of a new species. Zoosystematics and Evolution (101)3: 1197–1211. https://doi.org/10.3897/zse.101.155510
- Giarla TC, Jacob Esselstyn JA (2015) The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews. Systematic Biology 64(5): 727–740. https://doi.org/10.1093/sysbio/syv029
- He K, Liu Q, Xu DM, Qi FY, Bai J, He SW, Chen P, Zhou X, Cai W-Z, Chen Z-Z, Liu Z, Jiang X-L, Shi P (2021) Echolocation in soft-furred tree mice. Science 372. https://doi.org/10.1126/science.aay1513
- Huelsenbeck J, Rannala B (2004) Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Systematic Biology 53(6): 904–913. https://doi.org/10.1080/10635150490522629
- Hu TL, Cheng F, Xu Z, Chen ZZ, Yu L, Ban Q, Li C-L, Pan T, Zhang B-W (2021) Molecular and morphological evidence for a new species of the genus Typhlomys (Rodentia: Platacanthomyidae). Zoological Research 42(1): 100–107. https://doi.org/10.24272/j.issn.2095-8137.2020.132
- Jiang XL, Hoffmann RS (2001) A revision of the white-toothed shrews (Crocidura) of southern China. Journal of Mammalogy 82: 1059–1079. https://doi.org/10.1644/1545-1542(2001)082<1059:arotwt>2.0.co;2
- Kartavtsev YP (2011) Sequence divergence at mitochondrial genes in animals: Applicability of DNA data in genetics of speciation and molecular phylogenetics. Marine Genomics 4(2): 71–81. https://doi.org/10.1016/j.margen.2011.02.002
- Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16(2): 111–120. https://doi.org/10.1007/BF01731581
- Minh BQ, Trifinopoulos J, Schrempf D, Schmidt HA (2018) IQ-TREE version 1.6.8: Tutorials and Manual. Phylogenomic software by maximum likelihood http://www.iqtree.org
- Musser GG, Carleton MD (2005) Superfamily Muroidea. In: Wilson DE, Reeder DM (Eds) Mammal Species of the World: A Taxonomic and Geographic Reference. Baltimore: Johns Hopkins University Press, 894–1531.
- Na C, Wang X, Cheng Y, Huang Y, He S, Khanal L, Chen S, Jiang X, Chen Z (2025) Mitogenomic Insights into Phylogeny, Biogeography and Adaptive Evolution of the Genus Typhlomys (Rodentia: Platacanthomyidae). Animals 15(19): 2823. https://doi.org/10.3390/ani15192823
- Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32(1): 268–274. https://doi.org/10.1093/molbev/msu300
- Pu Y-T, Wan T, Fan R-H, Fu C-K, Tang K-Y, Jiang X-L, Zhang B-W, Hu T-L, Chen S-D, Liu S-Y (2022) A new species of the genus Typhlomys Milne-Edwards, 1877 (Rodentia: Platacanthomyidae) from Chongqing, China. Zoological Research 43(3): 413−417. https://doi.org/10.24272/j.issn.2095-8137.2021.338
- Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA (2018) Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7. Systematic Biology 67(5): 901–904. https://doi.org/10.1093/sysbio/syy032
- Rodrigues HG, Marivaux L, Vianey-Liaud M (2010) Phylogeny and systematic revision of Eocene Cricetidae (Rodentia, Mammalia) from Central and East Asia: on the origin of cricetid rodents. Journal of Zoological Systematics and Evolutionary Research 48(3): 259–268. https://doi.org/10.1111/j.1439-0469.2009.00542.x
- Ronquist F, Teslenko M, Mark PVD, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Huelsenbeck JP, Suchard MA (2012) MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61(3): 539–542. https://doi.org/10.1093/sysbio/sys029
- Smith AT (2008) Family Platacanthomyidae. In: Smith AT, Xie Y. A Guide to the Mammals of China. Changsha: Hunan Education Publishing House, 86–87. [in Chinese]
- Su WT, Chen ZZ, Wan T, Wang X, Zhou HY, Hu Y, et al. (2020) Taxonomy and distribution of the genus Typhlomys in China based on karyotypic and phylogenetic analyses. Acta Theriologica Sinica 40(3): 239–248. [in Chinese] https://doi.org/10.16829/j.slxb.150365
- Tamura K, Stecher G, Kumar S (2021) MEGA11: Molecular Evolutionary Genetics Analysis version 11. Molecular Biology and Evolution 38(7): 3022–3027. https://doi.org/10.1093/molbev/msab120
- Wang XM, Pan X, Liu YX, Murphy RW, Peng B, Duan C, Liao R, Wang X, Liu S (2025) Three new species of Neodon (Rodentia, Cricetidae) from Sichuan and Xizang, China. Zoosystematics and Evolution 101(3): 999–1012. https://doi.org/10.3897/zse.101.140898
- Wang YX, Li CY, Chen ZP (1996) Taxonomy, distribution and differentiation on Typhlomys cinereus (Platacanthomyidae, Mammalia). Acta Theriologica Sinica 16(1): 54–66. [in Chinese] https://doi.org/10.16829/j.slxb.1996.01.011
- Wei QJ, Cao L, He XC, Abramov A, Wang J, Fu J, Li R, Yang Q-S, Fu L-Q, Huang Y-H, Zhou C-Q, Wen Z-X, Ge D-Y(2025) Phylogenomics of the Genus Mustela with description of a new species from China. Journal of Systematics and Evolution 00(0): 1–17. https://doi.org/10.1111/jse.70029
- Xia L, Yang QS, Ma Y, Feng ZJ, Zhou LZ (2006) A Guide to the Measurement of Mammal Skull Ⅲ: Rodentia and Lagomorpha. Chinese Journal of Zoology 41(5): 68–71. [in Chinese] https://doi.org/10.13859/j.cjz.2006.05.013
- Yang QS, Xia L, Ma Y, Feng ZJ, Quan GQ (2005) A Guide to the Measurement of Mammal Skull Ⅰ: Basic Measurement. Chinese Journal of Zoology 40(3): 50–56. [in Chinese] https://doi.org/10.13859/j.cjz.2005.03.011
- Yang ZH, Rannala B (2010) Bayesian species delimitation using multilocus sequence data. Proceedings of the National Academy of Sciences 107(20): 9264–9269. https://doi.org/10.1073/pnas.0913022107
- You ML, Rong L, Xiong KN, Chen H, Li GC, Zhou YW, Gao XQ, Lin DD (2018) Effect of ecological isolated island of Fanjingshan in Guizhou based on the Comparative Analysis of Spermatophyte Flora, Molecular Plant Breeding 16(24): 8185–8198. [In Chinese]https://doi.org/10.13271/j.mpb.016.008185
- Zhang JJ, Kapli P, Pavlidis P, Stamatakis A (2013) A general species delimitation method with applications to phylogenetic placements. Bioinformatics 29(22): 2869–2876. https://doi.org/10.1093/bioinformatics/btt499
- Zhang D, Gao FL, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT (2020) PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Molecular Ecology Resources 20(1): 348–355. https://doi.org/10.1111/1755-0998.13096