Two new species of Cora (lichenized Basidiomycota, Lichenomphaliaceae) and additional records from Bolivia
Authors/Creators
- 1. University of Gdańsk, Gdańsk, Poland
- 2. W. Szafer Institute of Botany, Polish Academy of Sciences, Krakow, Poland
Description
Two new species of lichens, Cora neoparabovei Oset, Flakus & Guzow-Krzem. and C. neopseudobovei Oset, Flakus & Guzow-Krzem., are described based on material collected in Bolivia. The study is based on morphological and anatomical examinations, molecular phylogenetic analysis and haplotype network analysis of the nuITS rDNA sequences. Phenotypically, Cora neoparabovei is characterised by the long, concentrically arranged setae on the surface of the thallus and densely pilose margins, whereas in C. neopseudobovei the diagnostic features are the brown upper surface thallus when fresh, pale yellow to orange-yellow when dry, with slightly visible concentric colour zonation when dry and also with involute, creamy white margins. In addition, three species, i.e., Cora arcabucana B. Moncada, C. Rodr. & Lücking, C. cuzcoensis Holgado, Rivas Plata & Perlmutter, and C. undulata L.Y. Vargas, B. Moncada & Lücking, are reported as new to Bolivia. New records of C. aspera Wilk, Lücking & E. Morales from Bolivia are reported.
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References
- Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman J (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Research 25(17): 3389–3402. https://doi.org/10.1093/nar/25.17.3389
- Clement M, Snell Q, Walke P, Posada D, Crandall K (2002) TCS: estimating gene genealogies. 16th International Parallel and Distributed Processing Symposium 2: 184. https://doi.org/10.1046/j.1365-294x.2000.01020.x
- Dal Forno M, Lawrey JD, Sikaroodi M, Bhattarai S, Gillevet PM, Sulzbacher M, Lücking R (2013) Starting from scratch: Evolution of the lichen thallus in the basidiolichen Dictyonema (Agaricales: Hygrophoraceae). Fungal Biology 117(9): 584–598. https://doi.org/10.1016/j.funbio.2013.05.006
- Dal Forno M, Bungartz F, Yánez-Ayabaca A, Lücking R, Lawrey JD (2017) High levels of endemism among Galapagos basidiolichens. Fungal Diversity 85(1): 45–73. https://doi.org/10.1007/s13225-017-0380-6
- Dal Forno M, Kaminsky L, Rosentreter R, McMullin RT, Aptroot A, Lücking R (2019) A first phylogenetic assessment of Dictyonema s.lat. in southeastern North America reveals three new basidiolichens, described in honor of James D. Lawrey. Plant and Fungal Systematics 64(2): 383–392. https://doi.org/10.2478/pfs-2019-0025
- Dal Forno M, Kaminsky L, Lücking R (2021) Cora timucua. The IUCN Red List of Threatened Species 2021: e.T175711802A175712343. https://doi.org/10.2305/IUCN.UK.2021-1.RLTS.T175711802A175712343.en
- Dal Forno M, Lawrey JD, Moncada B, Bungartz F, Grube M, Schuettpelz E, Lücking R (2022) DNA Barcoding of Fresh and Historical Collections of Lichen-Forming Basidiomycetes in the Genera Cora and Corella (Agaricales: Hygrophoraceae): A Success Story? Diversity 14(4): 284. https://doi.org/10.3390/d14040284
- Ertz D, Lawrey JD, Sikaroodi M, Gillevet PM, Fischer E, Killmann D, Sérusiaux E (2008) A new lineage of lichenized basidiomycetes inferred from a two-gene phylogeny: The Lepidostromataceae with three species from the tropics. American Journal of Botany 95(12): 1548–1556. https://doi.org/10.3732/ajb.0800232
- Ertz D, Flakus A, Oset M, Sipman HJM, Kukwa M (2015) A first assessment of lichenized Arthoniales in Bolivia with descriptions of two new species. Phytotaxa 217(1): 1–25. https://doi.org/10.11646/phytotaxa.217.1.1
- Flakus A, Lücking R (2008) New species and additional records of foliicolous lichenized fungi from Bolivia. Lichenologist (London, England) 40(5): 423–436. https://doi.org/10.1017/S0024282908007378
- Flakus A, Sipman HJM, Rodriguez Flakus P, Schiefelbein U, Jabłońska A, Oset M, Kukwa M (2014) Contribution to the knowledge of the lichen biota of Bolivia. 6. Polish Botanical Journal 59(1): 63–83. https://doi.org/10.2478/pbj-2014-0020
- Flakus A, Kukwa M, Aptroot A (2016) Trypetheliaceae of Bolivia: An updated checklist with description of twenty four new species. Lichenologist (London, England) 48(6): 661–692. https://doi.org/10.1017/S0024282915000559
- Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny. Bioinformatics (Oxford, England) 12(6): 543–548. https://doi.org/10.1093/bioinformatics/12.6.543
- Gómez LD (1972) Los basidioliquenes de Costa Rica. Revista de Biología Tropical 20: 81–92.
- Gouy M, Guindon S, Gascuel O (2010) SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27(2): 221–224. https://doi.org/10.1093/molbev/msp259
- Guzow-Krzemińska B, Węgrzyn G (2000) Potential use of restriction analysis of PCR amplified DNA fragments in construction of molecular data-based identification keys of lichens. Mycotaxon 76: 305–313.
- Guzow-Krzemińska B, Flakus A, Kosecka M, Jabłońska A, Rodriguez-Flakus P, Kukwa M (2019) New species and records of lichens from Bolivia. Phytotaxa 397(4): 257–279. https://doi.org/10.11646/phytotaxa.397.4.1
- Hall T (2011) BioEdit: An important software for molecular biology. GERF Bulletin of Biosciences 2: 60–61.
- Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics (Oxford, England) 17(8): 754–755. https://doi.org/10.1093/bioinformatics/17.8.754
- Ibisch PL, Mérida G (2004) Biodiversity: The richness of Bolivia. State of knowledge and conservation. Ministry of Sustainable Development, Editorial FAN, 638 pp.
- Josse C, Navarro G, Comer P, Evans R, Faber-Langendoen D, Fellows M, Kittel G, Menard S, Pyne M, Reid M, Schulz K, Snow K, Teague J (2003) Ecological Systems of Latin America and the Caribbean: A Working Classification of Terrestrial Systems. Nature-Serve, Arlington, 47 pp.
- Katoh K, Rozewicki J, Yamada KD (2019) MAFFT online service: Multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20(4): 1160–1166. https://doi.org/10.1093/bib/bbx108
- Kuraku S, Zmasek CM, Nishimura O, Katoh K (2013) aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. Nucleic Acids Research 41(W1): W22–W28. https://doi.org/10.1093/nar/gkt389
- Lawrey JD, Binder M, Diederich P, Molina MC, Sikaroodi M, Ertz D (2007) Phylogenetic diversity of lichen-associated homobasidiomycetes. Molecular Phylogenetics and Evolution 44(2): 778–789. https://doi.org/10.1016/j.ympev.2006.12.023
- Lawrey JD, Lücking R, Sipman HJM, Chaves JL, Redhead SA, Bungartz F, Sikaroodi M, Gillevet PM (2009) High concentration of basidiolichens in a single family of agaricoid mushrooms (Basidiomycota: Agaricales: Hygrophoraceae). Mycological Research 113(10): 1154–1171. https://doi.org/10.1016/j.mycres.2009.07.016
- Lücking R, Dal-Forno M, Lawrey JD, Bungartz F, Rojas MEH, Hernández MJE, Marcelli MP, Moncada B, Morales EA, Nelsen MP, Paz E, Salcedo L, Spielmann AA, Wilk K, Will-Wolf S, Yánez-Ayabaca A (2013) Ten new species of lichenized Basidiomycota in the genera Dictyonema and Cora (Agaricales: Hygrophoraceae),with a key to all accepted genera and species in the Dictyonema clade. Phytotaxa 139(1): 1–38. https://doi.org/10.11646/phytotaxa.139.1.1
- Lücking R, Grall A, Thüs H (2014a) Typification of Thelephora pavonia Sw. and reinstatement of Cora ciferrii (Tomas.) comb. nov. Lichenologist (London, England) 46(6): 825–828. https://doi.org/10.1017/S0024282914000401
- Lücking R, Dal-Forno M, Wilk K, Lawrey JD (2014b) Three new species of Dictyonema (lichenized Basidiomycota: Hygrophoraceae) from Bolivia. Acta Nova 6: 4–16.
- Lücking R, Dal-Forno M, Sikaroodi M, Gillevet PM, Bungartz F, Moncada B, Yánez A, Chaves JL, Coca LF, Lawrey JD (2014c) A single macrolichen constitutes hundreds of unrecognized species. Proceedings of the National Academy of Sciences of the United States of America 111(30): 11091–11096. https://doi.org/10.1073/pnas.1403517111
- Lücking R, Barrie FR, Genney D (2014d) Dictyonema coppinsii, a new name for the european species known as Dictyonema interruptum (Basidiomycota: Agaricales: Hygrophoraceae), with a validation of its photobiont Rhizonema (Cyanoprokaryota: Nostocales: Rhizonemataceae). Lichenologist (London, England) 46(3): 261–267. https://doi.org/10.1017/S0024282913000352
- Lücking R, Cáceres MES, Silva NG, Alves RJV (2015) The genus Cora in the South Atlantic and the Mascarenes: Two novel taxa and inferred biogeographic relationships. The Bryologist 118(3): 293–303. https://doi.org/10.1639/0007-2745-118.3.293
- Lücking R, Dal Forno M, Moncada B, Coca LF, Vargas-Mendoza Y, Aptroot A, Arias LJ, Besal B, Bungartz F, Cabrera-Amaya DM, Cáceres MES, Chaves JL, Eliasaro S, Gutiérrez MC, Hernández-M JE, Herrera-Campos MA, Holgado-Rojas ME, Jonitz H, Kukwa M, Lucheta F, Madriñán S, Marcelli MP, Martins SMA, Mercado-Díaz JA, Molina JA, Morales EA, Nelson PR, Nugra F, Ortega F, Paredes T, Patiño AL, Peláez-Pulido RN, Pérez-Pérez RE, Perlmutter GB, Rivas-Plata ME, Robayo J, Rodríguez C, Simijaca DF, Soto-Medina E, Spielmann AA, Suárez-Corredor A, Torres JM, Vargas CA, Yánez-Ayabaca A, Weerakoon G, Wilk K, Celis-Pacheco M, Diazgranados M, Brokamp G, Borsch T, Gillevet PM, Sikaroodi M, Lawrey JD (2017) Turbo-taxonomy to assemble a megadiverse lichen genus: seventy new species of Cora (Basidiomycota: Agaricales: Hygrophoraceae), honouring David Leslie Hawksworth's seventieth birthday. Fungal Diversity 84(1): 139–207. https://doi.org/10.1007/s13225-016-0374-9
- Lücking R, Kaminsky L, Perlmutter GB, Lawrey JD, Dal Forno M (2020) Cora timucua (Hygrophoraceae), a new and potentially extinct, previously misidentified basidiolichen of Florida inland scrub documented from historical collections. The Bryologist 123(4): 657–673. https://doi.org/10.1639/0007-2745-123.4.657
- Lutzoni F, Vilgalys R (1995) Omphalina (Basidiomycota, Agaricales) as a model system for the study of coevolution in lichens. Cryptogamic Botany 5: 71–81.
- Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees in Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, LA, 1–8. https://doi.org/10.1109/GCE.2010.5676129
- Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32(1): 268–274. https://doi.org/10.1093/molbev/msu300
- Oberwinkler F (1970) Die Gattungen der Basidiolichenen. Vortr Gesamtgeb Bot 4: 139–169.
- Oberwinkler F (1984) Fungus-alga interactions in basidiolichens. Beiheft zur Nova Hedwigia 79: 739–774.
- Oberwinkler F (2012) Basidiolichens. In The Mycota. 2nd Edn, Vol. IX. Fungal Associations. In: B. Hock (Ed.) Berlin, Heidelberg, New York. 341–362. Springer. https://doi.org/10.1007/978-3-642-30826-0_16
- Orange A, James PW, White FJ (2001) Microchemical methods for the identification of lichens. British Lichen Society, London.
- Oset M, Guzow-Krzemińska B, Flakus A, Rodriguez-Flakus P, Kukwa M (2024) New records of Cora species (Hygrophoraceae, Agaricales, lichenized Basidiomycota) from Bolivia confirmed by molecular data. Phytotaxa 670(2): 083–096. https://doi.org/10.11646/phytotaxa.670.2.1
- Parmasto E (1978) The genus Dictyonema ('Thelephorolichenes'). Nova Hedwigia 29: 99–144.
- Petersen RH (1967) Notes on clavarioid fungi. VII. Redefinition of the Clavaria vernalis –C. mucida complex. American Midland Naturalist 77(1): 205–221. https://doi.org/10.2307/2423440
- Rambaut А (2009) FigTree v1.4., A Graphical Viewer of Phylogenetic Trees. http://tree.bio.ed.ac.uk/software/figtree/
- Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA (2018) Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7. Systematic Biology 67(5): 901–904. https://doi.org/10.1093/sysbio/syy032
- Redhead SA, Lutzoni F, Moncalvo JM, Vilgalys R (2002) Phylogeny of agarics: Partial systematics solutions for core omphalinoid genera in the Agaricales (euagarics). Mycotaxon 83: 19–57.
- Rodriguez-Flakus P, Kukwa M, Etayo J, Lücking R, Meneses RI, Rivas Plata E, Stanton D, Truong C, Vargas R, Flakus A (2016) Preliminary catalogue of lichens and lichenicolous fungi from Bolivia. http://bio.botany.pl/lichens-bolivia/en,strona,catalogue,5. html [Version 1.5, 31 December 2016]
- Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford, England) 19(12): 1572–1574. https://doi.org/10.1093/bioinformatics/btg180
- Ronquist F, Huelsenbeck J, van der Mark P (2005) MrBayes 3.1 manual. Distributed with the Program by the Authors.
- Tamura K, Stecher G, Kumar S (2021) MEGA11: Molecular Evolutionary Genetics Analysis version 11. Molecular Biology and Evolution 38(7): 3022–3027. https://doi.org/10.1093/molbev/msab120
- Vargas LY, Moncada B, Lücking R (2014) Five new species of Cora and Dictyonema (Basidiomycota: Hygrophoraceae) from Colombia: chipping away at cataloging hundreds of unrecognized taxa. The Bryologist 117(4): 368–378. https://doi.org/10.1639/0007-2745-117.4.368
- Vizzini A, Alvarado P, Consiglio G, Marchetti M, Xu J (2024) Family matters inside the order Agaricales: Systematic reorganization and classification of incertae sedis clitocyboid, pleurotoid and tricholomatoid taxa based on an updated 6-gene phylogeny. Studies in Mycology 107(1): 67–148. https://doi.org/10.3114/sim.2024.107.02
- White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innnis MA, Gelfand DH, Sninsky JJ, White TJ (Eds) PCR protocols: a guide to methods and applications. Academic Press, New York, 315–22. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Yánez A, Dal-Forno M, Bungartz F, Lücking R, Lawrey JD (2012) A first assessment of Galapagos basidiolichens. Fungal Diversity 52(1): 225–244. https://doi.org/10.1007/s13225-011-0133-x