Published November 4, 2025 | Version v1

DNA barcoding of Messor ants of Bulgaria with insights into their taxonomic diversity

  • 1. Sofia University, Faculty of Biology, Sofia, Bulgaria
  • 2. Sofia University, Faculty of Biology, Sofia, Bulgaria|National Museum of Natural History, Bulgarian Academy of Sciences, Sofia, Bulgaria
  • 3. University of Wroclaw, Wroclaw, Poland
  • 4. National Museum of Natural History, Bulgarian Academy of Sciences, Sofia, Bulgaria
  • 5. Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, Sofia, Bulgaria

Description

Despite ongoing efforts to catalogue European ant species, studies focusing on the genetic diversity of Balkan ants remain limited. An integrative approach combining morphology, genetics, ecology and biogeography is preferable for accurately identifying species and resolving taxonomic uncertainties, particularly amongst challenging insect taxa, such as the ants in the genus Messor (Hymenoptera, Formicidae).

In this study, we analyse ants of the genus Messor using DNA barcode sequences, with a particular focus on the Bulgarian fauna. A total of 85 COI sequences were examined, including 84 from Messor specimens and one from Aphaenogaster, which was used as an outgroup. Of these, 81 sequences were newly generated, while four were retrieved from GenBank. The majority of specimens were collected in Bulgaria (61), with additional samples from Greece (13), Türkiye (4), Albania (1) and North Macedonia (2), providing broader genetic and geographic representation.

Althogether, 11 Messor morphospecies were identified, based on specimens used for molecular analysis. To assess the degree of congruence between morphological and molecular data, six species delimitation analyses were conducted: RESL, GMYC, ASAP, ABGD, bPTP and mPTP. In addition, haplotype network analysis of all sequences identified 35 distinct and coherently clustered haplotypes, providing insights into genetic diversity.

The COI barcode region successfully distinguished Messor wasmanni Krausse, 1910, M. oertzeni Forel, 1910 and M. ibericus Santschi, 1931. In contrast, species pairs, such as M. atanassovii Atanassov, 1982 and M. creticus Salata & Borowiec, 2019, as well as M. ponticus Steiner et al., 2018 and M. hellenius Agosti & Collingwood, 1987, could not be reliably differentiated using COI data. Furthermore, Messor structor (Latreille, 1798) showed high intraspecific genetic diversity. Finally, the structor and instabilis species groups were recovered with moderate to high support in both Maximum Likelihood and Bayesian Inference analyses, confirming that M. oertzeni and M. hellenius belong to the structor group.

Our results provide a reference for future research and underscore the value of integrative taxonomic approaches in ant biodiversity studies.

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References

  • Baele G, Ji X, Hassler G, McCrone J, Shao Y, Zhang Z, Holbrook A, Lemey P, Drummond A, Rambaut A, Suchard M (2025) BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference. Nature Methods 22: 1653‑1656. https://doi.org/10.1038/s41592-025-02751-x
  • Bolton B (2025) An online catalog of the ants of the world. https://antcat.org. Accessed on: 2025-7-27.
  • Borowiec L (2014) Catalogue of ants of Europe, the Mediterranean Basin and adjacent regions (Hymenoptera: Formicidae). Genus (Wroclaw) 25 (1-2): 1‑340.
  • Borowiec L, Salata S (2025) A monographic review of ants of Greece (Hymenoptera: Formicidae). Review of the subfamily Myrmicinae except the genera Temnothorax and Tetramorium. Part 1: text. 2. Bytom: Natural History Monographs of the Upper Silesian Museum, 1-476 pp.
  • Branstetter MG, Longino JT, Reyes-López JL, Brady SG, Schultz TR (2022) Out of the temperate zone: A phylogenomic test of the biogeographical conservatism hypothesis in a contrarian clade of ants. Journal of Biogeography 49: 1640‑1653. https://doi.org/10.1111/jbi.14462
  • Cammeraat LH, Willott SJ, Compton SG, Incoll LD (2002) The effects of ants' nests on the physical, chemical and hydrological properties of a rangeland soil in semi-arid Spain. Geoderma 105 (1-2): 1‑20. https://doi.org/10.1016/S0016-7061(01)00085-4
  • Centorame M, Moschella F, Russini V, Fanfani A (2018) DNA-barcoding of the Italian members of the Aphaenogaster testaceopilosa-group (Hymenoptera: Formicidae): hybridization and biogeographic hypothesis. Zoologischer Anzeiger 277: 121‑130. https://doi.org/10.1016/j.jcz.2018.09.003
  • Clement M, Snell Q, Walke P, Posada D, Crandall K (2002) TCS: estimating gene genealogies. In: Werner B (Ed.) Parallel and Distributed Processing Symposium. Fort Lauderdale, California. 7 pp. https://doi.org/10.1109/IPDPS.2002.1016585
  • Darras H, Aron S (2015) Introgression of mitochondrial DNA among lineages in a hybridogenetic ant. Biology Letters 11: 20140971. https://doi.org/10.1098/rsbl.2014.0971
  • deWaard JR, Ratnasingham S, Zakharov EV, Borisenko AV, Steinke D, Telfer AC, Hebert PD (2019) A reference library for Canadian invertebrates with 1.5 million barcodes, voucher specimens, and DNA samples. Scientific Data 6 (1): 1‑12. https://doi.org/10.1038/s41597-019-0320-2
  • El Boukhrissi A, Taheri A, Bennas N, Reyes-Lopez JL (2023) Efficiency of foraging behavior in the ant genus Messor (Hymenoptera: Formicidae: Myrmicinae) in response to food distribution. European Journal of Entomology 120: 357‑365. https://doi.org/10.14411/eje.2023.039
  • Fujisawa T, Barraclough T (2013) Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent Approach: A revised method and evaluation on simulated data sets. Systematic Biology 62 (5): 707‑724. https://doi.org/10.1093/sysbio/syt033
  • Galkowski C, Aubert C, Blatrix R (2019) Aphaenogaster ichnusa Santschi, 1925, bona species, and redescription of Aphaenogaster subterranea (Latreille, 1798)(Hymenoptera, Formicidae). Sociobiology 66 (3): 420‑425. https://doi.org/10.13102/sociobiology.v66i3.3660
  • Gómez K, Martinez D, Espadaler X (2018) Phylogeny of the ant genus Aphaenogaster (Hymenoptera: Formicidae) in the Iberian Peninsula, with the description of a new species. Sociobiology 65 (2): 215‑224. https://doi.org/10.13102/sociobiology.v65i2.2099
  • Guénard B, Weiser M, Gomez K, Narula N, Economo E (2017) The Global Ant Biodiversity Informatics (GABI) database: a synthesis of ant species geographic distributions. Myrmecological News 24: 83‑89.
  • Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences of the United States of America 101 (41): 14812‑14817. https://doi.org/10.1073/pnas.0406166101
  • Hubert N, Phillips JD, Hanner RH (2024) Delimiting species with single-locus DNA sequences. Methods in Molecular Biology 2744: 53‑76. https://doi.org/10.1007/978-1-0716-3581-0_3
  • Hurst GD, Jiggins FM (2005) Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts. Proceedings of the Royal Society B: Biological Sciences 272 (1572): 1525‑1534. https://doi.org/10.1098/rspb.2005.3056
  • Janicki J, Narula N, Ziegler M, Guénard B, Economo EP (2016) Visualizing and interacting with large-volume biodiversity data using client-server web-mapping applications: The design and implementation of antmaps.org. Ecological Informatics 32: 185‑193. https://doi.org/10.1016/j.ecoinf.2016.02.006
  • Juvé Y, Weyna A, Lauroua E, Nidelet S, Khaldi M, Barech G, Lebas C, Rasplus J, Cruaud A, Condamine F, Romiguier J (2025a) Phylogenomics of Messor harvester ants (Hymenoptera: Formicidae: Stenammini) unravels their biogeographical origin and diversification patterns. Systematic Entomology 1-16 https://doi.org/10.1111/syen.12693
  • Juvé Y, Lutrat C, Ha A, Weyna A, Lauroua E, Silva AC, Roux C, Schifani E, Galkowski C, Lebas C, Allio R, Stoyanov I, Galtier N, Schlick-Steiner BC, Steiner FM, Baas D, Kaufmann B, Romiguier J (2025b) One mother for two species via obligate cross-species cloning in ants. Nature https://doi.org/10.1038/s41586-025-09425-w
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14 (6): 587‑589. https://doi.org/10.1038/nmeth.4285
  • Kapli P, Lutteropp S, Zhang J, Kobert K, Pavlidis P, Stamatakis A, Flouri T (2017) Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. Bioinformatics 33 (11): 1630‑1638. https://doi.org/10.1093/bioinformatics/btx025
  • Kumar S, Stecher G, Suleski M, Sanderford M, Sharma S, Tamura K (2024) MEGA12: Molecular Evolutionary Genetic Analysis Version 12 for adaptive and green computing. Molecular Biology and Evolution 41 (12): msae263. https://doi.org/10.1093/molbev/msae263
  • Lapeva-Gjonova A, Antonova V (2022) An updated checklist of ants (Hymenoptera, Formicidae) of Bulgaria, after 130 years of research. Biodiversity Data Journal 10: 95599. https://doi.org/10.3897/BDJ.10.e95599
  • Lapeva-Gjonova A, Borowiec L (2022) New and little-known ant species (Hymenoptera, Formicidae) from Bulgaria. Biodiversity Data Journal 10: 83658. https://doi.org/10.3897/BDJ.10.e83658
  • Leigh JW, Bryant D (2015) PopART: Full-feature software for haplotype network construction. Methods in Ecology and Evolution 6 (9): 1110‑1116. https://doi.org/10.1111/2041-210X.12410
  • Letunic I, Bork P (2021) Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation. Nucleic Acids Research 49: W293‑W296. https://doi.org/10.1093/nar/gkab301
  • Martoni F, Buxton J, Sparks KS, Li T, Smith RL, Rako L, Blacket MJ (2024) A morphological and high throughput sequencing workflow to identify Australian ants (Hymenoptera, Formicidae): a new tool for biosecurity and biodiversity. Metabarcoding and Metagenomics 8: 130531. https://doi.org/10.3897/mbmg.8.130531
  • Nguyen L, Schmidt H, Haeseler Av, Minh BQ (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32 (1): 268‑274. https://doi.org/10.1093/molbev/msu300
  • Onyinyechi PN, Travenzoli NM, Cristiano MP, Cardoso DC (2025) Exploratory analysis of molecular traits of the mitochondrial DNA of leafcutting ants to infer taxonomic characters towards an integrative taxonomy. Journal of Hymenoptera Research 98: 147‑163. https://doi.org/10.3897/jhr.98.133204
  • Plowes NJ, Johnson RA, Hoelldobler B (2013) Foraging behavior in the ant genus Messor (Hymenoptera: Formicidae: Myrmicinae). Myrmecological News 18: 33‑49.
  • Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA (2018) Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology 67 (5): 901‑904. https://doi.org/10.1093/sysbio/syy032
  • Ratnasingham S, Hebert PD (2013) A DNA-based registry for all animal species: The Barcode Index Number (BIN) System. PLOS One 8 (8): 66213. https://doi.org/10.1371/journal.pone.0066213
  • Romiguier J, Fournier A, Yek SH, Keller L (2017) Convergent evolution of social hybridogenesis in Messor harvester ants. Molecular Ecology 26 (4): 1108‑1117. https://doi.org/10.1111/mec.13899
  • Ronquist F, Teslenko M, Mark PVD, Ayres D, Darling A, Höhna S, Larget B, Liu L, Suchard M, Huelsenbeck J (2012) Mrbayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61 (3): 539‑542. https://doi.org/10.1093/sysbio/sys029
  • Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A (2017) DnaSP 6: DNA sequence polymorphism analysis of large data sets. Molecular Biology and Evolution 34 (12): 3299‑3302. https://doi.org/10.1093/molbev/msx248
  • Saar M, Eyer PA, Cohen TM, Ionescu-Hirsch A, Dor R, Dorchin N (2023) Systematics of harvester ants (Messor) in Israel based on integrated morphological, genetic, and ecological data. bioRxiv 2023-07 https://doi.org/10.1101/2023.07.16.549226
  • Salata S, Lapeva-Gjonova A, Georgiadis C, Borowiec L (2023) Review of the Messor semirufus complex (Hymenoptera, Formicidae) in Greece. ZooKeys 1185: 105‑142. https://doi.org/10.3897/zookeys.1185.111484
  • Schifani E, Alicata A, Menchetti M, Borowiec L, Fisher BL, Karaman C, Kiran K, Oueslati W, Salata S, Blatrix R (2022) Revisiting the morphological species groups of West-Palearctic Aphaenogaster ants (Hymenoptera: Formicidae) under a phylogenetic perspective: toward an evolutionary classification. Arthropod Systematics & Phylogeny 80: 627‑648. https://doi.org/10.3897/asp.80.e84428
  • Schlick-Steiner BC, Steiner FM, Konrad H, Markó B, Csősz S, Heller G, Ferencz B, Sipos B, Christian E, Stauffer C (2006) More than one species of Messor harvester ants (Hymenoptera: Formicidae) in Central Europe. European Journal of Entomology 103 (2): 469‑476. https://doi.org/10.14411/eje.2006.060
  • Steiner FM, Seifert B, Grasso DA, Le Moli F, Arthofer W, Stauffer C, Crozier RH, Schlick-Steiner BC (2011) Mixed colonies and hybridisation of Messor harvester ant species (Hymenoptera: Formicidae). Organisms Diversity & Evolution 11 (2): 107‑134. https://doi.org/10.1007/s13127-011-0045-3
  • Steiner FM, Csősz S, Markó B, Gamisch A, Rinnhofer L, Folterbauer C, Hammerle S, Stauffer C, Arthofer W, Schlick-Steiner BC (2018) Turning one into five: Integrative taxonomy uncovers complex evolution of cryptic species in the harvester ant Messor "structor". Molecular Phylogenetics and Evolution 127: 387‑404. https://doi.org/10.1016/j.ympev.2018.04.005
  • Strohmaier R, Arthofer W, Moder K, Konrad H, Stauffer C, Buschinger A, Struck N, Wagner H, Seifert B, Crozier R, Steiner F, Schlick-Steiner B (2025) Genetic and phenotypic responses to habitat fragmentation in a European harvester ant. Insect Conservation and Diversity1‑16. https://doi.org/10.1111/icad.12853
  • Suchard MA, Lemey P, Baele G, Ayres DL, Drummond AJ, Rambaut A (2018) Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evolution 4 (1): vey016. https://doi.org/10.1093/ve/vey016
  • Trifinopoulos J, Nguyen L, von Haeseler A, Minh BQ (2016) W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research 44 (1): 232‑235. https://doi.org/10.1093/nar/gkw256
  • Wang R, Kass JM, Galkowski C, Garcia F, Hamer MT, Radchenko A, Salata SD, Schifani E, Yusupov ZM, Economo EP, Guénard B (2023) Geographic and climatic constraints on bioregionalization of European ants. Journal of Biogeography 50: 503‑514. https://doi.org/10.1111/jbi.14546
  • Zhang J, Kapli P, Pavlidis P, Stamatakis A (2013) A general species delimitation method with applications to phylogenetic placements. Bioinformatics 29 (22): 2869‑2876. https://doi.org/10.1093/bioinformatics/btt499
  • Zięcina D, Menchetti M, Borowiec L, Bračko G, Lapeva-Gjonova A, Villa R, Salata S (2024) Taxonomic revision of the Aphaenogaster subterranea species group (Hymenoptera: Formicidae). Annales Zoologici 74 (2): 237‑282. https://doi.org/10.3161/00034541ANZ2024.74.2.002