Published April 1, 2015 | Version v1.0.0
Software Open

random_spr_walk: Random SPR Walk v1.0.0

Authors/Creators

  • 1. Fred Hutchinson Cancer Research Center

Description

Software for sampling random walks on rooted phylogenies via subtree-prune-and-regraft (SPR) or nearest neighbor interchange (NNI) moves. Initial version used for the paper:

C. Whidden And F. A. Matsen IV. Ricci-Ollivier Curvature of the Rooted Phylogenetic Subtree-Prune-Regraft Graph.

Files

random_spr_walk-v1.0.0.zip

Files (23.2 MB)

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md5:fb22d526df23a64d5732d0b6af6ce677
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Additional details

Related works

Is supplement to
https://github.com/cwhidden/random_spr_walk/tree/v1.0.0 (URL)