Published September 29, 2016 | Version v0.4.3
Software Open

TrypRNAseq - A easy to use pipeline for Trypanosoma RNAseq data

Authors/Creators

  • 1. Zentrum für Molekulare Biologie der Universität Heidelberg, Germany

Description

The TrypRNAseq pipeline is designed to take raw Illumina reads, does quality control, removal of overrepresented sequences and alignes the processed reads to a genome. In the end it counts the reads to a genome annotation .gtf file and produces a tab-sepparated file summarizing its results. Users only need to provide informations in the beginning of the pipeline via either a command-line dialogue or terminal command.

Files

klprint/TrypRNAseq-v0.4.3.zip

Files (84.6 MB)

Name Size
md5:533164a8e41ed24bb9f169ffb05e1f88
84.6 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/klprint/TrypRNAseq/tree/v0.4.3 (URL)