Published September 13, 2016 | Version v2.0
Software Open

hsosik/ifcb-analysis: IFCB-Analysis software system, initial formal release at v2 feature stage

Authors/Creators

  • 1. Woods Hole Oceanographic Institution

Description

IFCB-Analysis Software System

Designed for Imaging FlowCytobot (IFCB) data processing from initial image processing and analysis (segmentation / blob extraction, feature extraction) to automated classification (e.g., into plankton taxonomic groups). The code can also be used for analysis of other image data sets, such as those produced by the Video Plankton Recorder (VPR).

This release reflects code at the v2 stage for blob and feature extraction. (Known bugs are being addressed in the v3 development branch.)

See https://github.com/hsosik/ifcb-analysis/wiki for usage.

Heidi M. Sosik Woods Hole Oceanographic Institution

Files

hsosik/ifcb-analysis-v2.0.zip

Files (5.5 MB)

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Additional details

Related works

Is supplement to
https://github.com/hsosik/ifcb-analysis/tree/v2.0 (URL)