Published April 10, 2025 | Version v3
Dataset Open

Uropathogenic Escherichia coli genotype, phenotype, and patient characteristics, 2019 and 2022

Authors/Creators

  • 1. ROR icon University of California, San Francisco
  • 2. UCSF

Contributors

Description

This is a database of a collection of uropathogenic Escherichia coli isolates collected from a healthcare institution in San Francisco, California, US, over a 6-month period in 2019 and 2022. Samples were genotyped with the Doumith method. Antimicrobial resistant phenotype is included (names of antibiotics). Patient demographic characteristics are included. Isolates are denoted to be healthcare-associated if they were collected after 48 hours during a hospitalization or in patients who were hospitalized within 3 months of presentation for urine culture.

Files

Combined_2019_2022_Data_de_id.csv

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Additional details

Funding

National Institutes of Health
K12DK111028
National Institutes of Health
K23AI166030

Dates

Collected
2019
Collected
2022