Published September 6, 2021
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Table 1 in A re-analysis of the data in Sharkey et al. ' s (2021) minimalist revision reveals that BINs do not deserve names, but BOLD Systems needs a stronger commitment to open science
Description
Table 1 Comparison of published species and BIN numbers (April 2021)
| Study | Taxa | Journal | BINs in BOLD | Species or BINs published | Deviation (%) |
|---|---|---|---|---|---|
| Hebert et al. (2004) * | Astraptes (Lepidoptera: Hesperiidae) | PNAS | 5 | 10 species | 100 |
| Smith et al. (2006) * | Belvosia (Diptera: Tachinidae) | PNAS | 20 | 32 species | 60.0 |
| Raupach et al. (2016) | Carabidae (Coleoptera) | ZooKeys | 51 | 69 BINs | 35.3 |
| Chac´on et al. (2013)* | Dunama (Lepidoptera: Notodontidae, Nystaleinae) | ZooKeys | 6 | 8 species | 33.3 |
| Gibbs (2018) | Lasioglossum (Hymenoptera: Halictidae) | Genome | 85 | 110 species | 29.4 |
| Fernandez-Triana et al. (2014) * | Apanteles (Hymenoptera: Braconidae) | ZooKeys | 240 | 180 species | 25.0 |
| Smith et al. (2007) * | various Tachinidae (Diptera) | PNAS | 61 | 73 species | 19.7 |
| Janzen et al. (2011) * | Eudaminae and Pyrginae (Hesperiidae) skippers | PLoS One | 294 | 347† species | 18.0 |
| Hajibabaei et al. (2006) * | Hesperiidae, Sphingidae, Saturniidae (Lepidoptera) | PNAS | 600 | 521 species | 13.2 |
| Fleming et al. (2019) | Hyphantrophaga (Diptera, Tachinidae) | Biodiversity Data Journal | 25 | 22 species | 12.0 |
| Bartolini et al. (2020) | Anastrepha (Diptera, Tephritidae) | PLoS One | 17 | 15 species | 11.8 |
| Pohjoism¨aki et al. (2016) | Tachinidae (Diptera) | PLoS One | 331 | 366 BINs | 10.6 |
| Smith et al. (2008) * | Braconidae (Hymenoptera) | PNAS | 287 | 313 species | 9.1 |
| Fleming et al. (2014) * | Houghia (Diptera: Tachinidae) | Zootaxa | 34 | 35 species | 2.9 |
| Ortiz et al. (2017) | Erebidae (Lepidoptera) | Biodiversity Data Journal | 157 | 160 species | 1.9 |
| Burns et al. (2008) * | Perichares (Lepidoptera: Hesperiidae) | PNAS | 5 | 5 species | 0 |
Table 1
Comparison of published species and BIN numbers (April 2021)
* Study cited in Sharkey et al.
† Number includes 44 putative barcode clusters.
Notes
Published as part of Meier, Rudolf, Blaimer, Bonnie B., Buenaventura, Eliana, Hartop, Emily, von Rintelen, Thomas, Srivathsan, Amrita & Yeo, Darren, 2021, A re-analysis of the data in Sharkey et al. ' s (2021) minimalist revision reveals that BINs do not deserve names, but BOLD Systems needs a stronger commitment to open science, pp. 269 in Cladistics 38 (2) on page 269, DOI: 10.1111/cla.12489, http://zenodo.org/record/15076025
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- Journal article: 10.1111/cla.12489 (DOI)
- Journal article: urn:lsid:plazi.org:pub:BD7D1E06FFC1FFE6FFCDFFD7FFEC4D1B (LSID)
- Journal article: http://zenodo.org/record/15076025 (URL)
- Journal article: http://publication.plazi.org/id/BD7D1E06FFC1FFE6FFCDFFD7FFEC4D1B (URL)
References
- Hebert, P. D. N., Penton, E. H., Burns, J. M., Janzen, D. H. and Hallwachs, W., 2004. Ten species in one: DNA barcoding reveals cryptic species in the Neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci USA 101, 14812-14817.
- Smith, M. A., Woodley, N. E., Janzen, D. H., Hallwachs, W. and Hebert, P. D. N., 2006. DNA barcodes reveal cryptic hostspecificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae). Proc Natl Acad Sci USA 103, 3657-3662.
- Raupach, M. J., Hannig, K., Moriniere, J. and Hendrich, L., 2016. A DNA barcode library for ground beetles (Insecta, Coleoptera, Carabidae) of Germany: the genus Bembidion Latreille, 1802 and allied taxa. ZooKeys 592, 121-141.
- Gibbs, J., 2018. DNA barcoding a nightmare taxon: assessing barcode index numbers and barcode gaps for sweat bees. Genome 61, 21-31.
- Fernandez-Triana, J. L., Whitfield, J. B., Rodriguez, J. J., Smith, M. A., Janzen, D. H., Hallwachs, W. D., Hajibabaei, M., Burns, J. M. et al., 2014. Review of Apanteles sensu stricto (Hymenoptera, Braconidae, Microgastrinae) from Area de Conservacion Guanacaste, northwestern Costa Rica, with keys to all described species from Mesoamerica. ZooKeys 383, 1-565.
- Smith, M. A., Wood, D. M., Janzen, D. H., Hallwachs, W. and Hebert, P. D. N., 2007. DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists. Proc Natl Acad Sci USA 104, 4967-4972.
- Janzen, D. H., Hallwachs, W., Burns, J. M., Hajibabaei, M., Bertrand, C. and Hebert, P. D. N., 2011. Reading the complex skipper butterfly fauna of one tropical place. PLoS One, 6, e 19874.
- Hajibabaei, M., Janzen, D. H., Burns, J. M., Hallwachs, W. and Hebert, P. D. N., 2006. DNA barcodes distinguish species of tropical Lepidoptera. Proc. Natl Acad. Sci. USA 103, 968-971.
- Fleming, A. J., Wood, D. M., Smith, M. A., Dapkeyl, T., Hallwachs, W. and Janzen, D., 2019. Twenty-two new species in the genus Hyphantrophaga Townsend (Diptera: Tachinidae) from Area de Conservacion Guanacaste, with a key to the species of Mesoamerica. Biodivers. Data J. 7, e 29553.
- Bartolini, I., Rivera, J., Nolazco, N. and Olortegui, A., 2020. Towards the implementation of a DNA barcode library for the identification of Peruvian species of Anastrepha (Diptera: Tephritidae). PLoS One 15, e 0228136.
- Smith, M. A., Rodriguez, J. J., Whitfield, J. B., Deans, A. R., Janzen, D. H., Hallwachs, W. and Hebert, P. D. N., 2008. Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology, and collections. Proc Natl Acad Sci USA 105, 12359-12364.
- Fleming, A. J., Wood, D. M., Smith, M. A., Hallwachs, W. and Janzen, D. H., 2014. Revision of the New World species of Houghia Coquillett (Diptera, Tachinidae) reared from caterpillars in Area de Conservacion Guanacaste, Costa Rica. Zootaxa 3858, 1-90.
- Ortiz, A. S., Rubio, R. M., Guerrero, J. J., Garre, M. J., Serrano, J., Hebert, P. D. N. and Hausmann, A., 2017. Close congruence between Barcode Index Numbers (bins) and species boundaries in the Erebidae (Lepidoptera: Noctuoidea) of the Iberian Peninsula. Biodivers. Data J. 5, e 19840.
- Burns, J. M., Janzen, D. H., Hajibabaei, M., Hallwachs, W. and Hebert, P. D. N., 2008. DNA barcodes and cryptic species of skipper butterflies in the genus Perichares in Area de Conservacion Guanacaste, Costa Rica. Proc. Natl Acad. Sci. USA 105, 6350-6355.