Published June 18, 2024
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TABLE 2. Different nucleotide bases between Colletotrichum paridis, C in Colletotrichum paridis sp. nov., a novel endophytic species on Paris polyphylla var. chinensis
Authors/Creators
- 1. State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems; Center for Grassland Microbiome; Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs; Engineering Research Center of Grassland Industry, Ministry of Education; Gansu Tech Innovation Center of Western China Grassland Industry; College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China.
Description
TABLE 2. Different nucleotide bases between Colletotrichum paridis, C. jinshuiense and Colletotrichum sp. strain CGMCC 3.15172 at different gene loci.
| Base (bp) Species | Strain | ITS | act | gapdh | tub2 | chs-1 | his3 | Summary | Literature cited |
|---|---|---|---|---|---|---|---|---|---|
| C. paridis | BCTJB1* | Check | Check | Check | Check | Check | Check | Check | This study |
| C. paridis | BCTJB2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | This study |
| C. paridis | BCTJB3 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | This study |
| C. paridis | BCTJB4 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | This study |
| C. jinshuiense | PAFQ26* | 0 | 2 (2gaps) | 6 | 0 | 3 | … | 11 | (Fu et al. 2019a) |
| C. jinshuiense | PAFQ26a | 0 | 1 (1gap) | 6 | 0 | 3 (1gap) | … | 10 | (Fu et al. 2019a) |
| C. jinshuiense | PAFQ26b | 0 | 1 (1gap) | 6 | 0 | 3 (1gap) | … | 10 | (Fu et al. 2019a) |
| C. jinshuiense | PAFQ26c | 0 | … | 6 | 0 | 3 (1gap) | … | 9 | (Fu et al. 2019a) |
| C. jinshuiense | PAFQ26d | 0 | 1 (1gap) | 6 | 0 | 3 | … | 10 | (Fu et al. 2019a) |
| C. jinshuiense | KCTC 46679* | 0 | 0 | 8 (1gap) | 4 | 4 | 2 | 18 | (Lee & Jung 2018) |
| C. jinshuiense | KCTC 46680 | 0 | 0 | 8 (1gap) | 4 | 4 | 2 | 18 | (Lee & Jung 2018) |
| C. jinshuiense | LC8509 | 0 | 0 | 7 | 3 | 4 | 2 | 16 | (Liu et al. 2022) |
| C. jinshuiense | EsH8 | 0 | 0 | 8 | 3 | 1 | … | 12 | (Wang et al. 2023) |
| C. jinshuiense | EsH11 | 1 (1gap) | 0 | 7 | 2 | 1 | … | 11 | (Wang et al. 2023) |
| Colletotrichum sp. | CGMCC 3.15172 | 0 | 0 | 9 (2gaps) | 4 (1gap) | … | … | 13 | (Tao et al. 2013) |
Note: Sequences generated in this study are indicated in bold; ex-type strains are marked with an asterisk (*); …, absent.
Notes
Published as part of Cui, Hua-Wei, Malik, Kamran, Xue, Long-Hai & Wei, Xue-Kai, 2024, Colletotrichum paridis sp. nov., a novel endophytic species on Paris polyphylla var. chinensis, pp. 181 in Phytotaxa 653 (2) on page 181, DOI: 10.11646/phytotaxa.653.2.6, http://zenodo.org/record/13216961
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References
- Fu, M., Crous, P. W., Bai, Q., Zhang, P. F., Xiang, J., Guo, Y. S., Zhao, F. F., Yang, M. M., Hong, N., Xu, W. X. & Wang, G. P. (2019 a) Colletotrichum species associated with anthracnose of Pyrus spp. in China. Persoonia 42: 1 - 35. https: // doi. org / 10.3767 / persoonia. 2019.42.01
- Lee, S. Y. & Jung, H. Y. (2018) Colletotrichum kakivorum sp. nov., a new leaf spot pathogen of persimmon in Korea. Mycological Progress 17: 1113 - 1121. https: // doi. org / 10.1007 / s 11557 - 018 - 1424 - 3
- Liu, F., Ma, Z. Y., Hou, L. W., Diao, Y. Z., Wu, W. P., Damm, U., Song, S. & Cai, L. (2022) Updating species diversity of Colletotrichum, with a phylogenomic overview. Studies in Mycology 101: 1 - 56. https: // doi. org / 10.3114 / sim. 2022.101.01
- Wang, Z. Q., Yang, X. L., Chang, X. Q., You, J. M., Zhou, Y., Tan, Q., Luo, C. X., Zhang, S. & Lv, L. (2023) First report of anthracnose caused by Colletotrichum jinshuiense on goldthread in China. Plant Disease 107: 964. https: // doi. org / 10.1094 / PDIS- 07 - 22 - 1528 - PDN
- Tao, G., Liu, Z. Y., Liu, F., Gao, Y. H. & Cai, L. (2013) Endophytic Colletotrichum species from Bletilla ochracea (Orchidaceae), with descriptions of seven new speices. Fungal Diversity 61: 139 - 164. https: // doi. org / 10.1007 / s 13225 - 013 - 0254 - 5