| Acanthostigma chiangmaiense Boonmee & K.D. Hyde | MFLUCC 10-0125T | JN865197 | JN865185 | KF301560 |
| Allophaeosphaeria muriformis Ariyaw., Camporesi & K.D. Hyde | MFLUCC 13-0349T | KP765681 | KP765682 | - |
| Bambusaria bambusae (J.N. Kapoor & H.S. Gill) Jaklitsch, D.Q. Dai, K.D. Hyde and Voglmayr | CBS 139763 | KP687813 | KP687962 | KP687983 |
| Botryobambusa fusicoccum Phook., Jian K. Liu & K.D. Hyde | MFLUCC 11-0143T | JX646809 | JX646826 | - |
| Botryosphaeria agaves (Henn.) E.J. Butler | MFLUCC 11-0125T | JX646808 | JX646825 | - |
| Botryosphaeria dothidea (Moug.) Ces. & De Not. | CBS 115476 | DQ678051 | DQ677998 | DQ767637 |
| Cophinforma atrovirens (Mehl & Slippers) A. Alves & A.J.L. Phillips | MFLUCC 11-0425T | JX646817 | JX646833 | - |
| Dematiopleospora mariae Wanas., Camporesi, E.B.G. Jones & K.D. Hyde | MFLUCC 13-0612T | KJ749653 | KJ749652 | KJ749655 |
| Dothidea hippophaes Fuckel | CBS 188.58 | DQ678048 | U42475 | DQ677887 |
| Dothidea insculpta Wallr. | CBS 189.58 | DQ247802 | DQ247810 | DQ471081 |
| Gloniopsis praelonga (Schwein.) Underw. & Earle | CBS 112415 | FJ161173 | FJ161134 | FJ161090 |
| Helicangiospora lignicola Boonmee, Bhat & K.D. Hyde | MFLUCC 11-0378T | KF301531 | KF301539 | KF301552 |
| Helicoma chiangraiense Boonmee & K.D. Hyde | MFLUCC 10-0115 | JN865188 | JN865176 | KF301551 |
| Helicoma fagacearum Boonmee & K.D. Hyde | MFLUCC 11-0379 | KF301532 | KF301540 | KF301553 |
| Hysterium angustatum Alb. & Schwein. | CBS 236.34 | FJ161180 | GU397359 | FJ161096 |
| Hysterobrevium smilacis (Schwein.) E. Boehm & C.L. Schoch | CBS 114601 | FJ161174 | FJ161135 | FJ161091 |
| Hysteropatella clavispora (Peck) Höhn. | CBS 247.34 | AY541493 | DQ678006 | DQ677901 |
| Kellermania macrospora (Durieu & Mont.) Minnis & A.H. Kenn. | CBS 131716T | JX444874 | JX444902 | - |
| Kellermania yuccigena Ellis & Everh. | CBS 131727 | JX444883 | JX444908 | - |
| Minutisphaera aspera Raja, Oberlies, Shearer & A.N. Mill. | DSM 29478T | KP309993 | KP309999 | - |
| Minutisphaera fimbriatispora Shearer, A.N. Mill. & A. Ferrer | A242-8a | HM196367 | HM196374 | - |
| Minutisphaera japonica Kaz. Tanaka, Raja & Shearer | JCM 18560T | AB733440 | AB733434 | - |
| Murispora rubicunda (Niessl) Y. Zhang ter, J. Fourn. & K.D. Hyde | IFRD 2017 | FJ795507 | GU456308 | GU456289 |
| Myriangium duriaei Mont. & Berk. | CBS 260.36 | DQ678059 | AY016347 | DQ677900 |
| Myrmaecium rubrum (Aptroot, Aa & Petrini) Jaklitsch & Voglmayr | CBS 109505 | GU456324 | GU456303 | GU456260 |
| Myrmaecium fulvopruinatum (Berk.) Jaklitsch & Voglmayr | CBS 139058 | KP687861 | KP687968 | KP688030 |
| Myrmaecium rubricosum (Fr.) Fuckel | CBS 139068 | KP687885 | KP687979 | KP688053 |
| Neodactylaria obpyriformis Guevara-Suarez, Deanna A. Sutton, Wiederh. & Gené | CBS 142668 | MK562751 | MK562750 | - |
| Neodactylaria simaoensis H. Zheng & Z.F. Yu | YMF 1.3984 | MH379210 | MK562747 | MK562748 |
| Oedohysterium insidens (Schwein.) E. Boehm & C.L. Schoch | CBS 238.34 | FJ161182 | FJ161142 | FJ161097 |
| Parawiesneriomyces syzygii Crous & M.J. Wingf. | CBS 141333T | KX228339 | - | - |
| Patellaria atrata (Hedw.) Fr. | CBS 958.97 | GU301855 | GU296181 | GU349038 |
| Phaeotrichum benjaminii Malloch & Cain | CBS 541.72 | AY004340 | AY016348 | DQ677892 |
| Phyllosticta ampelicida (Engelm.) Aa | CBS 237.48 | DQ678085 | DQ678034 | - |
| Phyllosticta citricarpa (McAlpine) Aa | CBS 102374 | GU301815 | GU296151 | GU349053 |
| Populocrescentia forlicesenensis Wanas., Camporesi, E.B.G. Jones & K.D. Hyde | MFLUCC 14-0651T | KT306952 | KT306955 | - |
| Pseudogliophragma indica Phadke & V.G. Rao | MTCC 11985T | KM052851 | KM052852 | - |
| Psiloglonium araucanum (Speg.) E. Boehm, Marinc. & C.L. Schoch | CBS 112412 | FJ161172 | FJ161133 | FJ161089 |
| Saccharata proteae (Wakef.) Denman & Crous | CBS 115206 | GU301869 | GU296194 | GU349030 |
| Schismatomma decolorans (Erichsen) Clauzade & Vězda | DUKE 47570 | AY548815 | AY548809 | DQ883725 |
| Speiropsis pedatospora Tubaki | CBS 397.59 | KR869797 | - | - |
| Trematosphaeria pertusa Fuckel | CBS 122368 | FJ201990 | FJ201991 | GU456276 |
| Trematosphaeria pertusa Fuckel | CBS 122371 | FJ201992 | FJ201993 | GU349085 |
| Trichodelitschia bisporula (P. Crouan & H. Crouan) Munk | CBS 262.69 | GU348996 | GU349000 | GU349020 |
| Trichodelitschia munkii N. Lundq. | Kruys 201 | DQ384096 | DQ384070 | - |
| Tubeufia chiangmaiensis Boonmee & K.D. Hyde | MFLUCC 11-0514T | KF301538 | KF301543 | KF301557 |
| Tubeufia javanica Penz. & Sacc. | MFLUCC 12-0545T | KJ880036 | KJ880035 | KJ880037 |
| Valsaria insitiva (Tode) Ces. & De Not. | CBS 127882T | KP687886 | KP687980 | KP688054 |
| Valsaria lopadostomoides Jaklitsch & Voglmayr | CBS 139062T | KP687868 | KP687972 | KP688037 |
| Valsaria neotropica Jaklitsch, J. Fourn. & Voglmayr | CBS 139064T | KP687874 | KP687974 | KP688042 |
| Valsaria robiniae (Schwein.) Cooke | CBS 139063 | KP687870 | KP687973 | KP688039 |
| Valsaria rudis (P. Karst. & Har.) Theiss. & Syd. ex Petr. & Syd. | CBS 139066T | KP687879 | KP687976 | KP688047 |
| Valsaria spartii Maubl. | CBS 139070T | KP687843 | KP687964 | KP688013 |