Published August 4, 2021
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Table 1 in Four new species in the Tremella fibulifera complex (Tremellales, Basidiomycota)
Authors/Creators
- 1. Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China & College of Forestry, Beijing Forestry University, Beijing 100083, China
- 2. Departamento de Micologia, Centro de Biociencias, Universidade Federal de Pernambuco, Av. da Engenharia s / n, Recife, Pernambuco 50740 - 570, Brazil
- 3. Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China
Description
Table 1. Sequencing primers used in this study.
| Pairs of primer | Nucleotide sequence (5′-3′) | Reference |
|---|---|---|
| ITS | ||
| ITS5 | 5′-GGAAGTAAAAGTCGTAACAAGG-3′ | White et al. 1990 |
| ITS4 | 3′-TCCTCCGCTTATTGATATGC-5′ | |
| ITS1 | 5′-TCCGTAGGTGAACCTGCGG-3′ | |
| Partial nLSU | ||
| LR0R | 5′-ACCCGCTGAACTTAAGC-3′ | Hopple and Vilgalys 1994 |
| LR7 | 5′-TACTACCACCAAGATCT-3′ | |
| TEF1 | ||
| 983F | 5′-GCYCCYGGHCAYCGTGAYTTYAT-3′ | Rehner 2001 |
| 1567R | 3′-ACHGTRCCRATACCACCRATCTT-5′ | Rehner 2001 |
| 2218R | 3′-ATGACACCRACRGCRACRGTYTG-5′ | Rehner and Buckley 2005 |
| RPB1 | ||
| Af | 5′-GARTGYCCDGGDCAYTTYGG-3′ | Stiller and Hall 1997 |
| Cr | 3′-CCNGCDATNTCRTTRTCCATRTA-5′ | Matheny et al. 2002 |
| RPB2 | ||
| 5F | 5′-GAYGAYMGWGATCAYTTYGG-3′ | Matheny 2005 |
| 6F | 5′-TGGGGKWTGGTYTGYCCTGC-3′ | Matheny 2005 |
| 7R | 3′-CCCATWGCYTGCTTMCCCAT-5′ | Matheny 2005 |
| 7CR | 3′-CCCATRGCTTGYTTRCCCAT-5′ | Matheny 2005 |
| Fcrypto | 5′-TGGGGYATGGTTTGTCCKGC-3′ | Ye et al. 2012 |
| Rcrypto | 3′-CCCATGGCTTGTTTRCCCATYGC-5′ | Ye et al. 2012 |
| mtSSU | ||
| MS1 | 5′-CAGCAGTCAAGAATATTAGTCAATG-3′ | White et al. 1990 |
| MS2 | 3′-GCGGATTATCGAATTAAATAAC-5′ | White et al. 1990 |
Notes
Published as part of Fan, Long-Fei, Alvarenga, Renato Lucio Mendes, Gibertoni, Tatiana Baptista, Wu, Fang & Dai, Yu-Cheng, 2021, Four new species in the Tremella fibulifera complex (Tremellales, Basidiomycota), pp. 33 in MycoKeys 82 on page 33, DOI: 10.3897/mycokeys.82.63241
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Additional details
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References
- White, TJ, Bruns, T, Lee, S, Taylor, J, 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, MA, Gelfand, DH, Sninsky, JJ, White, TJ, Eds., PCR protocols: a guide to methods and applications. Academic press, San Diego: 315 - 322, DOI: https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Hopple, JS, Vilgalys, R, 1994. Phylogenetic relationships among coprinoid taxa and allies based on data from restriction site mapping of nuclear rDNA. Mycologia 86: 96 - 107, DOI: https://doi.org/10.1080/00275514.1994.12026378
- Rehner, S, 2001. Primers for elongation factor 1-α (EF1-α). http://ocid.nacse.org/research/deephyphae/EF1primer
- Rehner, SA, Buckley, E, 2005. A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97: 84 - 98, DOI: https://doi.org/10.3852/mycologia.97.1.84
- Stiller, JW, Hall, BD, 1997. The origin of red algae: implications for plastid evolution. Proceedings of the National Academy of Sciences 94: 4520 - 4525, DOI: https://doi.org/10.1073/pnas.94.9.4520
- Matheny, PB, Liu, YJ, Ammirati, JF, Hall, BD, 2002. Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales). American Journal of Botany 89: 688 - 698, DOI: https://doi.org/10.3732/ajb.89.4.688
- Matheny, PB, 2005. Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Molecular Phylogenetics and Evolution 35: 1 - 20, DOI: https://doi.org/10.1016/j.ympev.2004.11.014
- Ye, J, Coulouris, G, Zaretskaya, I, Cutcutache, I, Rozen, S, Madden, T, 2012. Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics 13: e134. https://doi.org/10.1186/1471-2105-13-134