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Published September 21, 2023 | Version v1
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TABLE 2. Phylogenetic matrix partitioning schemes resulting from PartitionFinder 2 in Phylogeny of North America's largest cicada radiation redefines Tibicinoides and Okanagana (Hemiptera: Auchenorrhyncha: Cicadidae: Tibicininae)

Authors/Creators

  • 1. Entomology Section, Natural History Museum of Los Angeles County, 900 Exposition Boulevard, Los Angeles, CA 90007 USA & Division of Natural Sciences, Pasadena City College, 1570 East Colorado Boulevard, Pasadena, CA 91106 USA
  • 2. Institute of Biology, Carleton University, 1125 Colonel By Drive, Ottawa, Canada, K 1 S 5 B 6
  • 3. Department of Entomology, California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA 94188 USA
  • 4. Department of Ecology and Evolutionary Biology, University of Connecticut Hartford, 10 Prospect Street, Hartford, CT 06103 USA https: // orcid. org / 0000 - 0002 - 3691 - 2592
  • 5. Department of Biochemistry, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093 USA https: // orcid. org / 0000 - 0002 - 8454 - 8393
  • 6. Division of Natural Sciences, Pasadena City College, 1570 East Colorado Boulevard, Pasadena, CA 91106 USA

Description

TABLE 2. Phylogenetic matrix partitioning schemes resulting from PartitionFinder 2 analysis.

PartitionModelGene regions included in partition
Analysis 1: nDNA
1K80+ΓARD1 and EF1α CDS1st codon positions
2F81ARD1 and EF1α CDS 2nd codon positions
3GTR+ΓEF1α CDS 3rd codon position and introns, CAM introns
4HKY+IARD1 CDS 3rd codon position and UTR
Analysis 2: mtDNA
1HKY+I+Γ16S
2HKY+I+ΓCOI and COII 1st codon positions, COII 2nd codon position
3GTR+I+ΓCOI 2nd codon position
4HKY+I+ΓCOI and COII 3rd codon positions
Analysis 3: concatenated matrix
1F81+IARD1 and EF1α CDS 1st codon positions
2GTR+ΓEF1α CDS 3rd codon position and introns, CAM introns
3HKY+I+ΓARD1 UTR and CDS 3rd codon position, and COI 2nd codon position
4HKY+I+Γ16S
5HKY+I+ΓCOI 1st codon position, COII 1st and 2nd codon positions
6HKY+I+ΓCOI and COII 3rd codon positions

Notes

Published as part of Cole, Jeffrey A., Chatfield-Taylor, Will, Smeds, Elliott A., Cooley, John R., Gonzalez, Valorie A. & Wong, Caressa, 2023, Phylogeny of North America's largest cicada radiation redefines Tibicinoides and Okanagana (Hemiptera: Auchenorrhyncha: Cicadidae: Tibicininae), pp. 508 in Zootaxa 5346 (5) on page 508, DOI: 10.11646/zootaxa.5346.5.1, http://zenodo.org/record/8390635

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Identifiers

URL
http://table.plazi.org/id/DF526675987AFF0E03B93C83FB3B00E4

Is cited by
Taxonomic treatment: 10.5281/zenodo.8407576 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/038487EB986EFF1D03B63F18FD2B03CB (URL)
Taxonomic treatment: 10.5281/zenodo.8407578 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/038487EB9868FF1C03B63DADFAE703E9 (URL)
Taxonomic treatment: 10.5281/zenodo.8407580 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/038487EB9868FF1E03B63B19FEBE0050 (URL)
Is part of
Journal article: 10.11646/zootaxa.5346.5.1 (DOI)
Journal article: urn:lsid:plazi.org:pub:FFBDFF93987DFF0903213D3AFFAB0135 (LSID)
Journal article: http://publication.plazi.org/id/FFBDFF93987DFF0903213D3AFFAB0135 (URL)
Journal article: http://zenodo.org/record/8390635 (URL)
Journal article: http://zoobank.org/C8CA09D0-51A8-4E4D-A1A2-FB9E82D557B7 (URL)