Published August 26, 2024 | Version v2

Data Associated With: A forward genetic screen identifies Sirtuin1 as a driver of neuroendocrine prostate cancer

Authors/Creators

  • 1. EDMO icon Columbia University
  • 2. EDMO icon Massachusetts Institute of Technology

Description

This dataset contains the raw and intermediate data files for the TAPDANCE (Transposon Analysis Pipeline for Driver And Cancer Element identification) analysis used in the paper "A forward genetic screen identifies Sirtuin1 as a driver of neuroendocrine prostate cancer."

The dataset includes:

  1. seqs.tab - Raw sequencing reads containing barcodes and IRDR (inverted repeat/direct repeat) sequences from a Sleeping Beauty transposon screen in a mouse model of neuroendocrine prostate cancer.
  2. mapping.zip - Compressed intermediate mapping files produced by TAPDANCE.pl that show the genomic locations of transposon insertions.
  3. CIS.zip - Compressed intermediate files generated during the Common Insertion Site (CIS) analysis, containing statistical calculations and region identifications.

These files complement the complete TAPDANCE analysis results available in the GitHub repository: https://github.com/alevax/sleeping-beauty-paper

The TAPDANCE pipeline identifies common insertion sites (CIS) that represent potential driver genes in neuroendocrine prostate cancer development. This dataset enables reproducibility of the analysis described in the paper and provides a resource for researchers studying genetic drivers of aggressive prostate cancer subtypes.

Files

CIS.zip

Files (21.4 GB)

Name Size
md5:2ecfae4d4e8360c4e5c9be9c45ed8d56
6.2 MB Preview Download
md5:add6df0f59c8b21845188cb81935b5c2
260.8 MB Preview Download
md5:45b7010415b22c14c64bc936848b01f4
21.2 GB Download

Additional details

Related works

Is supplement to
Journal article: 10.1101/2024.08.24.609538 (DOI)

Software