Published April 11, 2025
| Version v1
Dataset
Open
HDMA Fragment Files + Count Matrices StomachEsophagus
Authors/Creators
-
Liu, Betty B.1
-
Jessa, Selin1
-
Kim, Samuel H.1
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Ng, Yan Ting2
- Higashino, Soon Il1
- Marinov, Georgi K.1
- Chen, Derek C.1
- Parks, Benjamin E.1
- Li, Li1
- Nguyen, Tri C.1
- Wang, Austin T.1
- Wang, Sean K.1
- Tan, Serena Y.1
- Kosicki, Michael3
- Pennacchio, Len A.3
- Ben-David, Eyal2
- Pasca, Anca M.1
- Kundaje, Anshul1
- Farh, Kyle K.H.2
- Greenleaf, William J.1
- 1. Stanford University
- 2. Illumina AI Lab
- 3. Lawrence Berkeley National Laboratory
Description
This is the ATAC fragment files and RNA count matrices for HDMA (Liu*, Jessa*, Kim*, Ng* et al, bioRxiv 2025). A detailed description of the main data types deposited on Zenodo can be found here.
Files
Files
(28.2 GB)
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4.2 GB | Download |
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280.0 MB | Download |
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2.2 MB | Download |
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4.5 GB | Download |
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1.6 MB | Download |
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539.2 MB | Download |
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3.6 GB | Download |
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2.2 MB | Download |
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md5:caf146f6e6c60ed792045bf8272f144f
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312.7 kB | Download |
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3.1 GB | Download |
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md5:e78c1b1d4125f4edcda41e1f5117a6f0
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1.4 MB | Download |
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319.5 MB | Download |
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md5:04ee37483e43a81dec0fbdadcb279f65
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2.2 MB | Download |
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md5:caf146f6e6c60ed792045bf8272f144f
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312.7 kB | Download |
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md5:b66ec3345b3ab7a939b70f2c565493a8
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3.4 GB | Download |
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md5:3259479519d21811e57aefc58893f7a7
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1.4 MB | Download |
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md5:fa52cced78d0c7fb14e14fb10aab7078
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561.4 MB | Download |
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md5:94d9288e8842381de0b16f4a9b15395e
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2.2 MB | Download |
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md5:caf146f6e6c60ed792045bf8272f144f
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312.7 kB | Download |
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md5:27dd8c9a187592e031ba54eacbf0a5d7
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3.5 GB | Download |
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md5:ee61ac6cf76f0b67e6f5aa3948695678
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1.4 MB | Download |
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md5:39cf9833efcfdc5096ddfab581794045
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485.1 MB | Download |
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md5:e700c95b9d3c921117f445e4259f2b1b
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2.2 MB | Download |
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md5:caf146f6e6c60ed792045bf8272f144f
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312.7 kB | Download |
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md5:0c44754a5fa81841aee3227ca22f4423
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2.8 GB | Download |
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md5:a4da8c54e1089aad1a594c8db9d231f4
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1.3 MB | Download |
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md5:26d1eafa2d6f4dc870de75404d82c91e
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217.1 MB | Download |
Additional details
Related works
- Is supplement to
- Preprint: 10.1101/2025.04.30.651381 (DOI)