Published March 5, 2025
| Version v1
Dataset
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HPRC2 preliminary MC panel
Authors/Creators
Description
HPRC2 panel generated from the preliminary Minigraph-Cactus graph
VCFs were generated from the MC VCFs obtained here: https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=pangenomes/scratch/2024_11_22_minigraph_cactus/hprc-v2.prerelease.2-mc-chm13-eval-nov22/ using this pipeline: https://github.com/eblerjana/genotyping-pipelines/tree/main/prepare-vcf-MC
mc-chm13-eval-nov22_filtered_ids_biallelic.vcf.gz: Bi-allelic VCF representing variants (decomposed from the graph)
mc-chm13-eval-nov22_filtered_ids.vcf.gz: Multi-allelic VCF representing bubbles (PanGenie input VCF)