Published March 4, 2025 | Version v1
Dataset Restricted

MethylGPT training data (CSV+Parquet) [2025-03] Part3

Authors/Creators

Description

MethylGPT: a foundation model for the DNA methylome

Kejun Ying, Jinyeop Song, Haotian Cui, Yikun Zhang, Siyuan Li, Xingyu Chen, Hanna Liu, Alec Eames, Daniel L McCartney, Riccardo E. Marioni, Jesse R. Poganik, Mahdi Moqri, Bo Wang, Vadim N. Gladyshev
doi: https://doi.org/10.1101/2024.10.30.621013

The original paper only provided .parquet files, and this archive includes the converted csv files.
The conversion python script is included.
 
block_csv_data_004e7259eaf362cd3c8bc20382f2f414.parquet
block_csv_data_065ae543862878a3b25e63f603409da3.parquet
block_csv_data_0afd628a35bbd78055e1a9381f32ff1e.parquet
block_csv_data_0e3be7e1d9866f1ad39cb2621beeb7d8.parquet
block_csv_data_13171dba06b1a088df70099a00e72151.parquet
block_csv_data_1924c62f8cb89141593c24714d6c1e65.parquet
block_csv_data_1e5c40614c99d1fffafc8a8e184dd0a5.parquet
block_csv_data_2089bebd247b2433ed33ea9d12d9db84.parquet
block_csv_data_20f541a697e783500c738a6131f1b2ab.parquet
block_csv_data_345ce6b435f90324f98cdda6f4f50f46.parquet
block_csv_data_35d97d06e939d48677d7a01c1363c5f3.parquet
block_csv_data_38c4506e2d72e3683604b5c50ad4f076.parquet
block_csv_data_3941297e1b1aaae90a60c8df9c54034c.parquet
block_csv_data_4aae7c789af24f348124f8e781142157.parquet
block_csv_data_53a059f188435ca5efec79fa1bd67b4f.parquet
block_csv_data_54f5759f486708f945dd47e83de8fd66.parquet
block_csv_data_5bfaa04c16c6cc53689b3fe28e4d1f93.parquet
block_csv_data_5cdc5c7c5f88447f9aa6ec6cd34a502d.parquet
block_csv_data_5f01d54eeaff09eba88f3c9664172b8b.parquet
block_csv_data_6e1eaf094843c8071d778baedbfbece4.parquet
block_csv_data_8171931a591303d832915016b1d0ab08.parquet
block_csv_data_88deb2f6290358d637c39d9588a9a9a8.parquet
block_csv_data_8e83eae85e66eaa60ce37a2763b7db3d.parquet
block_csv_data_93b0312e638402a4012924094769610d.parquet
block_csv_data_973ffa1195651d44d268d2d2c936ccfa.parquet
block_csv_data_9bde46d2f9b37db4d7fe47a27b3a6d5c.parquet
block_csv_data_a52dc6c8998c6d1c9ecb83f74b986860.parquet
block_csv_data_a7ecd016916a5e14b355f6741a1e4821.parquet
block_csv_data_c193bb776d2d730c97492fca43eaa0d3.parquet
block_csv_data_c5398e6833ee0770f2b75ce25d4f2e98.parquet
block_csv_data_c7be6c639edd9da55f6748070f595dd2.parquet
block_csv_data_cbe2d41e5f325f039474f40c45ab5c67.parquet
block_csv_data_e48b9d127732987f3a113b5a9fc13aea.parquet
block_csv_data_fe93c87cdfaa111d1d8e7c7e6dbc8856.parquet
block_csv_data_53a059f188435ca5efec79fa1bd67b4f.csv
block_csv_data_38c4506e2d72e3683604b5c50ad4f076.csv
block_csv_data_0e3be7e1d9866f1ad39cb2621beeb7d8.csv
block_csv_data_0afd628a35bbd78055e1a9381f32ff1e.csv
probe_ids_type3.csv
parquet.to.csv.py

List of files in https://zenodo.org/uploads/14968905:

block_csv_data_a52dc6c8998c6d1c9ecb83f74b986860.csv
block_csv_data_3941297e1b1aaae90a60c8df9c54034c.csv
block_csv_data_8e83eae85e66eaa60ce37a2763b7db3d.csv
block_csv_data_1e5c40614c99d1fffafc8a8e184dd0a5.csv
block_csv_data_4aae7c789af24f348124f8e781142157.csv
block_csv_data_8171931a591303d832915016b1d0ab08.csv
block_csv_data_5bfaa04c16c6cc53689b3fe28e4d1f93.csv
block_csv_data_973ffa1195651d44d268d2d2c936ccfa.csv
block_csv_data_345ce6b435f90324f98cdda6f4f50f46.csv
block_csv_data_54f5759f486708f945dd47e83de8fd66.csv

List of files in https://zenodo.org/uploads/14968908:

block_csv_data_c7be6c639edd9da55f6748070f595dd2.csv
block_csv_data_fe93c87cdfaa111d1d8e7c7e6dbc8856.csv
block_csv_data_5cdc5c7c5f88447f9aa6ec6cd34a502d.csv
block_csv_data_c5398e6833ee0770f2b75ce25d4f2e98.csv
block_csv_data_20f541a697e783500c738a6131f1b2ab.csv
block_csv_data_88deb2f6290358d637c39d9588a9a9a8.csv
block_csv_data_004e7259eaf362cd3c8bc20382f2f414.csv
block_csv_data_a7ecd016916a5e14b355f6741a1e4821.csv
block_csv_data_5f01d54eeaff09eba88f3c9664172b8b.csv
block_csv_data_cbe2d41e5f325f039474f40c45ab5c67.csv

List of files in https://zenodo.org/uploads/14968912:

block_csv_data_9bde46d2f9b37db4d7fe47a27b3a6d5c.csv
block_csv_data_2089bebd247b2433ed33ea9d12d9db84.csv
block_csv_data_35d97d06e939d48677d7a01c1363c5f3.csv
block_csv_data_065ae543862878a3b25e63f603409da3.csv
block_csv_data_1924c62f8cb89141593c24714d6c1e65.csv
block_csv_data_c193bb776d2d730c97492fca43eaa0d3.csv
block_csv_data_e48b9d127732987f3a113b5a9fc13aea.csv
block_csv_data_13171dba06b1a088df70099a00e72151.csv
block_csv_data_6e1eaf094843c8071d778baedbfbece4.csv
block_csv_data_93b0312e638402a4012924094769610d.csv

Files

Restricted

The record is publicly accessible, but files are restricted. Log in to check if you have access.

Additional details

Related works

Is supplement to
Publication: 10.1101/2024.10.30.621013 (DOI)

Software

Repository URL
https://github.com/albert-ying/MethylGPT/tree/main/data

References

  • Kejun Ying, Jinyeop Song, Haotian Cui, Yikun Zhang, Siyuan Li, Xingyu Chen, Hanna Liu, Alec Eames, Daniel L McCartney, Riccardo E. Marioni, Jesse R. Poganik, Mahdi Moqri, Bo Wang, Vadim N. Gladyshev, MethylGPT: a foundation model for the DNA methylome, doi: https://doi.org/10.1101/2024.10.30.621013